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We ask users to cite:

  1. Any specific publications of plugins used.
  2. The general Fiji paper, if you used Fiji.
  3. The general ImageJ paper.

If journal reference limits interfere, the plugin-specific publications should take precedence.

In general, please cite these projects—their long-term future depends on it!

Thank you for your support.

Publications to cite

Project Citation Google Scholar
ImageJ Schneider, C. A.; Rasband, W. S. & Eliceiri, K. W. (2012), "NIH Image to ImageJ: 25 years of image analysis", Nature methods 9(7): 671-675, PMID 22930834, <>. on Google Scholar
ImageJ2 Schindelin, J.; Rueden, C. T. & Hiner, M. C. et al. (2015), "The ImageJ ecosystem: An open platform for biomedical image analysis", Molecular Reproduction and Development, PMID 26153368, <>. on Google Scholar
Fiji Schindelin, J.; Arganda-Carreras, I. & Frise, E. et al. (2012), "Fiji: an open-source platform for biological-image analysis", Nature methods 9(7): 676-682, PMID 22743772, <>. on Google Scholar
ImgLib2 Pietzsch, T.; Preibisch, S. & Tomancak, P. et al. (2012), "ImgLib2—generic image processing in Java", Bioinformatics 28(22): 3009-3011, PMID 22962343, <>. on Google Scholar
SciJava Common Rueden, C., Schindelin, J., Hiner, M. & Eliceiri, K. (2015). SciJava Common [Software]. -
SCIFIO Hiner, M., Rueden, C. & Eliceiri, K. (2015). SCIFIO [Software]. -
ImageJ Ops Rueden, C., Dietz, C., Horn, M., Schindelin, J., Northan, B., Berthold, M. & Eliceiri, K. (2015). ImageJ Ops [Software]. -
Other Browse the list of citable software and publications using Fiji for additional citation information. -