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Bug 1006 - grid stitching exception
grid stitching exception
Status: RESOLVED FIXED
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
Macintosh Mac OS
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2015-02-18 09:46 CST by Ferdinando Pucci
Modified: 2015-02-19 10:10 CST
1 user (show)

See Also:

Attachments
tile config file (1.89 KB, text/plain)
2015-02-18 09:46 CST, Ferdinando Pucci

Description Ferdinando Pucci 2015-02-18 09:46:03 CST 
(Fiji Is Just) ImageJ 2.0.0-rc-24/1.49m; Java 1.6.0_65 [64-bit]; Mac OS X 10.10.1; 90MB of 15983MB (<1%)
 
java.lang.ClassCastException: mpicbg.models.TranslationModel3D cannot be cast to mpicbg.models.TranslationModel2D
	at mpicbg.stitching.CollectionStitchingImgLib.stitchCollection(CollectionStitchingImgLib.java:108)
	at plugin.Stitching_Grid.run(Stitching_Grid.java:506)
	at ij.IJ.runUserPlugIn(IJ.java:202)
	at ij.IJ.runPlugIn(IJ.java:166)
	at ij.Executer.runCommand(Executer.java:131)
	at ij.Executer.run(Executer.java:64)
	at java.lang.Thread.run(Thread.java:695)

Information about your version of Java:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.10.1
  java.version => 1.6.0_65
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_65-b14-466.1-11M4716
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.65-b04-466.1
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: CHECK_TURNED_OFF

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
  imagej.dir => /Applications/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150209161030)
Fiji: http://fiji.sc/update/ (last check:20150216163537)

Files not up-to-date:
  424f128a (MODIFIED) 20150205094843 Contents/Info.plist
  1ad3be0d (LOCAL_ONLY) 20140214180410 jars/jpedalSTD.jar
  617c3507 (LOCAL_ONLY) 20140513152031 plugins/QuickTime_Plugins.jar
Comment 1 Ferdinando Pucci 2015-02-18 09:46:53 CST 
Created attachment 235
tile config file
Comment 2 Ferdinando Pucci 2015-02-18 09:48:12 CST 
If I select "compute overlap" the exception is:
(Fiji Is Just) ImageJ 2.0.0-rc-24/1.49m; Java 1.6.0_65 [64-bit]; Mac OS X 10.10.1; 101MB of 15983MB (<1%)
 
java.lang.ArrayIndexOutOfBoundsException: 2
	at mpicbg.models.TranslationModel3D.applyInPlace(TranslationModel3D.java:40)
	at mpicbg.models.TranslationModel3D.estimateBounds(TranslationModel3D.java:166)
	at mpicbg.stitching.fusion.Fusion.estimateBounds(Fusion.java:1121)
	at mpicbg.stitching.fusion.Fusion.estimateBounds(Fusion.java:1069)
	at mpicbg.stitching.fusion.Fusion.fuse(Fusion.java:74)
	at plugin.Stitching_Grid.run(Stitching_Grid.java:588)
	at ij.IJ.runUserPlugIn(IJ.java:202)
	at ij.IJ.runPlugIn(IJ.java:166)
	at ij.Executer.runCommand(Executer.java:131)
	at ij.Executer.run(Executer.java:64)
	at java.lang.Thread.run(Thread.java:695)