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Bug 1097 - Trasnform>Interactive Stack Rotation does nothing
Trasnform>Interactive Stack Rotation does nothing
Status: RESOLVED INVALID
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
Macintosh Mac OS
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2015-06-19 10:45 CDT by Christophe Leterrier
Modified: 2015-06-19 11:41 CDT
3 users (show)

See Also:
Description Christophe Leterrier 2015-06-19 10:45:44 CDT 
Title says it all : nothing happens when launching the Interactive Stack Rotation on a stack. No message, no console log.

Information about your version of Java:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.10.3
  java.version => 1.8.0_45
  java.vendor => Oracle Corporation
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.8.0_45-b14
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 25.45-b02
  java.vm.vendor => Oracle Corporation
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.8
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: /Library/Java/JavaVirtualMachines/jdk1.8.0_45.jdk/Contents/Home//jre
  imagej.dir => /Users/christo/Travail/Labo/Processing/Fiji_current/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150618000647)
Fiji: http://fiji.sc/update/ (last check:20150617220654)
BAR: http://sites.imagej.net/Tiago/ (last check:20150604164025)
Biomedgroup: http://sites.imagej.net/Biomedgroup/ (last check:20150503123038)
DiameterJ: http://sites.imagej.net/DiameterJ/ (last check:20150123222550)
GDSC-SMLM: http://sites.imagej.net/GDSC-SMLM/ (last check:20150327132750)
PTBIOP: http://biop.epfl.ch/Fiji-Update/ (last check:20150616143734)

Files not up-to-date:
  2418366b (MODIFIED) 20150526101715 Contents/Info.plist
  1ad3be0d (LOCAL_ONLY) 20140925172353 jars/jpedalSTD.jar
  953fe5a5 (LOCAL_ONLY) 20150527153548 luts/ThunderSTORM.lut
  c1503832 (LOCAL_ONLY) 20150210161301 luts/parula.lut
  ebd9888a (MODIFIED) 20130910230945 macros/StartupMacros.fiji.ijm
  37d3408d (LOCAL_ONLY) 20130910230945 macros/StartupMacros.fiji_stock.ijm
  d1606fa9 (LOCAL_ONLY) 20150119165712 macros/myTool.txt
  1e948734 (LOCAL_ONLY) 20140423133536 macros/toolsets/3D_AIS_Measure.ijm
  39bf367e (LOCAL_ONLY) 20150202162414 macros/toolsets/ChriSTORM.ijm
  dca2b75a (LOCAL_ONLY) 20121116182554 macros/toolsets/Intensity Ratios Tools.ijm
  d28c5f20 (LOCAL_ONLY) 20140331210831 macros/toolsets/PeakFinder_Tool.txt
  e9cc69cf (LOCAL_ONLY) 20140116225135 macros/toolsets/Simple AIS Measure Tools.ijm
  491f95aa (LOCAL_ONLY) 20120531234749 macros/toolsets/Test_Shortcut.ijm
  b4343d06 (LOCAL_ONLY) 20150130092313 plugins/ChriSTORM/Batch_Add_Z_Uncertainty.js
  b64896ea (LOCAL_ONLY) 20150618104605 plugins/ChriSTORM/Batch_NS_to_TS.js
  54f383d2 (LOCAL_ONLY) 20150217185734 plugins/ChriSTORM/Batch_Process_Locs.ijm
  9b110ba8 (LOCAL_ONLY) 20150128154352 plugins/ChriSTORM/Batch_Remove_Extreme_Z.ijm
  fb1cf5ae (LOCAL_ONLY) 20150605183711 plugins/ChriSTORM/Batch_Warp_Channels.js
  a5aead38 (LOCAL_ONLY) 20150128144443 plugins/ChriSTORM/F-NStxtSplit.js
  dae326fc (LOCAL_ONLY) 20150618103328 plugins/ChriSTORM/F-NStxtTranslate.js
  0f33f0d1 (LOCAL_ONLY) 20150130092313 plugins/ChriSTORM/F-TSAddZUnc.js
  c01157dc (LOCAL_ONLY) 20150513134620 plugins/ChriSTORM/F-TSRotate.js
  9fce7546 (LOCAL_ONLY) 20150618103622 plugins/ChriSTORM/F-TSTranslate.js
  065b9f7d (LOCAL_ONLY) 20150130092313 plugins/ChriSTORM/F-TSWarp.js
  7354eee5 (LOCAL_ONLY) 20150605144943 plugins/ChriSTORM/Generate_Reconstructions.ijm
  95fd7c62 (LOCAL_ONLY) 20150605145059 plugins/ChriSTORM/Generate_Zoom&Slices.ijm
  10436835 (LOCAL_ONLY) 20150129185850 plugins/ChriSTORM/Get_Z_Range.js
  06a2cbc2 (LOCAL_ONLY) 20150130092313 plugins/ChriSTORM/Single_Add_Z_Uncertainty.js
  c08a3f2d (LOCAL_ONLY) 20150130092313 plugins/ChriSTORM/Single_Get_Z_Range.js
  c23ad61f (LOCAL_ONLY) 20150130092313 plugins/ChriSTORM/Single_NS_split.js
  01fff67b (LOCAL_ONLY) 20150618104614 plugins/ChriSTORM/Single_NS_to_TS.js
  6d2ebbdd (LOCAL_ONLY) 20150130092314 plugins/ChriSTORM/Single_Rotate_Locs.js
  c3d2eb4c (LOCAL_ONLY) 20141027102052 plugins/ChriSTORM/Slice_to_Zoom_ROI.ijm
  de9b2ed2 (LOCAL_ONLY) 20150527160500 plugins/ChriSTORM/newSyntax.ijm
  55958f35 (LOCAL_ONLY) 20150618103442 plugins/Thunder_STORM.jar
  f58c5b2e (LOCAL_ONLY) 20131105141630 plugins/added macros/Calculate_Ratios.ijm
  b70ea00d (LOCAL_ONLY) 20150121171007 plugins/added macros/Calculate_Ratios_2.ijm
  c73c63d4 (LOCAL_ONLY) 20120203190735 plugins/added macros/Calib_EMGain.ijm
  23565f48 (LOCAL_ONLY) 20120123170343 plugins/added macros/Convert_Image_to_Icon.ijm
  36c6bbff (LOCAL_ONLY) 20150121103457 plugins/added macros/Convert_ndf_to_ROI.ijm
  5759d835 (LOCAL_ONLY) 20140306191916 plugins/added macros/Correct_&_Split_Channels.ijm
  1e1afbf4 (LOCAL_ONLY) 20140517214448 plugins/added macros/Duplicate_wLabel.ijm
  6a5e9f21 (LOCAL_ONLY) 20120120190326 plugins/added macros/Edit_Cat_ROIs.ijm
  d0ae64a9 (LOCAL_ONLY) 20120523184024 plugins/added macros/Extract_LIF.ijm
  681f02d5 (LOCAL_ONLY) 20140423133537 plugins/added macros/Extract_Zeiss.ijm
  fa330291 (LOCAL_ONLY) 20130530200036 plugins/added macros/Generate_Comets.ijm
  b4baa60d (LOCAL_ONLY) 20130908215841 plugins/added macros/Generate_Kymos.ijm
  40277102 (LOCAL_ONLY) 20140624222024 plugins/added macros/Generate_Stacks_Folder.ijm
  d4e49dd3 (LOCAL_ONLY) 20121116182556 plugins/added macros/Generate_Tracings_Folder_monoCh.ijm
  d1f51ed7 (LOCAL_ONLY) 20150320102620 plugins/added macros/Generate_Tracings_Folder_multiCh.ijm
  aa4dfffd (LOCAL_ONLY) 20140211211257 plugins/added macros/Make_Projections.ijm
  6b42d1ed (LOCAL_ONLY) 20120203190735 plugins/added macros/Mean_vs_SD.ijm
  951f3d28 (LOCAL_ONLY) 20150323122536 plugins/added macros/Measure_Intensities.ijm
  ec2b207d (LOCAL_ONLY) 20120120190326 plugins/added macros/Normalize_Movie.ijm
  44725a89 (LOCAL_ONLY) 20120120190326 plugins/added macros/Pad_Image_to_Stack.ijm
  848b3f14 (LOCAL_ONLY) 20140201140529 plugins/added macros/Plot_Column.ijm
  cf33bc89 (LOCAL_ONLY) 20130419214758 plugins/added macros/RGB_Profiles_Tool.ijm
  a04dd29d (LOCAL_ONLY) 20120120190326 plugins/added macros/Register_Coverslip_Zeiss.ijm
  464c88ea (LOCAL_ONLY) 20120120190326 plugins/added macros/Running_Average.ijm
  7eec215c (LOCAL_ONLY) 20120928172722 plugins/added macros/Simple_AIS_Measure.ijm
  61572565 (LOCAL_ONLY) 20130506225216 plugins/added macros/Simple_AIS_Measure_new.ijm
  d3faf6a6 (LOCAL_ONLY) 20120120190326 plugins/added macros/Stitch_Processed_Mosaic.ijm
  4a24763e (LOCAL_ONLY) 20120120190326 plugins/added macros/Transfer_Labels.ijm
  3e4083ae (LOCAL_ONLY) 20140829213750 plugins/added plugins/Actin2_Quantifier.class
  3fb5f7a5 (LOCAL_ONLY) 20060922124728 plugins/added plugins/Align_4.class
  ac3d73f5 (LOCAL_ONLY) 20130502205606 plugins/added plugins/Align_RGB_planes.jar
  f0aabf4f (LOCAL_ONLY) 20141204110724 plugins/added plugins/Align_Slice.class
  819f350a (LOCAL_ONLY) 20140813222136 plugins/added plugins/Cidre_Plugin.jar
  0a5c1981 (LOCAL_ONLY) 20130419214758 plugins/added plugins/Color_Profiler.jar
  c60c5966 (LOCAL_ONLY) 20131115215344 plugins/added plugins/FIRE_plugin.jar
  66f0be96 (LOCAL_ONLY) 20120120190326 plugins/added plugins/Fast_Filters$1.class
  7b74cdd1 (LOCAL_ONLY) 20120120190326 plugins/added plugins/Fast_Filters.class
  e9e5c061 (LOCAL_ONLY) 20140129213842 plugins/added plugins/Image_Stabilizer.class
  1fd3d1a6 (LOCAL_ONLY) 20140219221145 plugins/added plugins/Image_Stabilizer_Log_Applier.class
  a7eaa6cb (LOCAL_ONLY) 20140929103108 plugins/added plugins/KymoResliceWide_.jar
  a5d02cb7 (LOCAL_ONLY) 20140929103541 plugins/added plugins/Kymo_graph1001.jar
  dad4b299 (LOCAL_ONLY) 20130731193228 plugins/added plugins/M2LE_Pipeline.jar
  f07dd15c (LOCAL_ONLY) 20120120190326 plugins/added plugins/NeuronJ_.jar
  2b0f8e5e (LOCAL_ONLY) 20130419214758 plugins/added plugins/Radial_Profile.jar
  15638c2e (LOCAL_ONLY) 20140331202439 plugins/added plugins/Radial_Profile_Angle_Ext.jar
  050d136b (LOCAL_ONLY) 20150116121620 plugins/added plugins/SOS_release.jar
  97813c51 (LOCAL_ONLY) 20130331152055 plugins/added plugins/Sigma_Filter_Plus.class
  be06fe59 (LOCAL_ONLY) 20140929103634 plugins/added plugins/action_bar202.jar
  5229937c (LOCAL_ONLY) 20120120190326 plugins/added plugins/mm_nd_and_roi_pack.jar
  b551b948 (LOCAL_ONLY) 20150526101715 plugins/added scripts/Autocorr.js
  8fa95c18 (LOCAL_ONLY) 20140916183646 plugins/added scripts/Fit_Sinus.js
  65cc7812 (LOCAL_ONLY) 20150526101715 plugins/added scripts/Fit_Sinus_AC.js
  216ea972 (LOCAL_ONLY) 20150324111144 plugins/added scripts/Get_by_Conditions.js
  9b45a4b8 (LOCAL_ONLY) 20150527154338 plugins/added scripts/Make_TS_LUT.js
  f75d3f54 (LOCAL_ONLY) 20150403123207 plugins/added scripts/Pro_Feat_Fit.js
  8d6c5209 (LOCAL_ONLY) 20150319172543 plugins/added scripts/Profile_AlignRef.js
  4f471c4a (LOCAL_ONLY) 20140802100606 plugins/added scripts/Reassign_ROIs_HS channels.js
  b5d7dea9 (LOCAL_ONLY) 20140915182716 plugins/added scripts/Reassign_ROIs_HS to S.js
  5dea0423 (LOCAL_ONLY) 20140619220039 plugins/added scripts/Remove_Background_Median.js
  ccc0dfcb (LOCAL_ONLY) 20140624222024 plugins/added scripts/SAM2_V2.js
Comment 1 Jan Eglinger 2015-06-19 11:03:05 CDT 
Did you try to press F1 when the stack window is in focus?
See http://fiji.sc/Interactive_Stack_Rotation

I tried on Mac OSX and Windows and it worked as expected, although I agree that the user experience could be enhanced by showing some hint how to use this plugin.
Comment 2 Christophe Leterrier 2015-06-19 11:12:45 CDT 
You're right, it is actually working. Once I found the way to do F1 on an iMac keyboard I saw the help dialog.

Thanks!
Comment 3 Curtis Rueden 2015-06-19 11:41:37 CDT 
Great, glad to hear it is working.

If you want to make an enhancement request to make the plugin more user friendly, you can do so here:

https://github.com/axtimwalde/mpicbg/issues/new