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Bug 1126 - Bio-Formats plug-in doesn't open EasyRatioPro .seq files
Bio-Formats plug-in doesn't open EasyRatioPro .seq files
Status: RESOLVED MOVED
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
Macintosh Mac OS
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2015-07-29 07:34 CDT by Nickolai
Modified: 2015-07-29 09:03 CDT
2 users (show)

See Also:


Attachments
This is a sample of the easyratio pro file that Bio-Formats should open, but doesn't (1.13 MB, video/seq)
2015-07-29 07:38 CDT, Nickolai

Description Nickolai 2015-07-29 07:34:28 CDT
It says here that Bio-Formats should recognise the .seq file: https://www.openmicroscopy.org/site/support/bio-formats5.1/formats/imagepro-sequence.html
However, when I try to open the files generated by EasyRatioPro software (http://www.pti-nj.com/products/Fluorescence-Imaging-Systems/EasyRatioPro/EasyRatioPro.html), it says that the file format is nor recognised. Looking at the contents, it seems that .seq is just tiff images interspersed with metadata, so should be openable...
Please let me know if you would like a .seq file or the session .esf file to reproduce it.
Kind Regards,
Nickolai.

Information about your version of Java:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.10.4
  java.version => 1.8.0_40
  java.vendor => Oracle Corporation
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.8.0_40-b26
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 25.40-b25
  java.vm.vendor => Oracle Corporation
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.8
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: /Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/
  imagej.dir => /Applications/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150722035527)
Fiji: http://fiji.sc/update/ (last check:20150724205809)

Files not up-to-date:
  ddad4022 (MODIFIED) 20140818152715 Contents/Info.plist
  1ad3be0d (LOCAL_ONLY) 20130129003808 jars/jpedalSTD.jar
  ece0e0cc (LOCAL_ONLY) 20130624204648 macros/toolsets/Magic Montage.txt
  88f402c4 (LOCAL_ONLY) 20131111170039 plugins/Exif_Reader.jar
  20e2cec7 (LOCAL_ONLY) 20131209110846 plugins/ICTN_1_6_.jar
  369b6351 (MODIFIED) 20130916104942 plugins/TrackMate_-2.1.1-SNAPSHOT.jar
  5f60d96e (LOCAL_ONLY) 20140108131630 plugins/Watershed_.jar
Comment 1 Nickolai 2015-07-29 07:38:29 CDT
Created attachment 254
This is a sample of the easyratio pro file that Bio-Formats should open, but doesn't
Comment 2 Mark Hiner 2015-07-29 09:03:07 CDT
Thanks for taking the time to report this issue. Bio-Formats actually maintains their own issue tracker:
https://www.openmicroscopy.org/site/support/bio-formats5.1/about/bug-reporting.html

So I encourage you to report this issue with the Bio-Formats team directly. They are typically quite responsive!