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Bug 1131 - cannot open .czi files with jpeg xr compression
cannot open .czi files with jpeg xr compression
Status: NEW
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Windows
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2015-07-31 07:08 CDT by Kartik
Modified: 2015-07-31 07:08 CDT
1 user (show)

See Also:
Description Kartik 2015-07-31 07:08:56 CDT 
loci.formats.UnsupportedCompressionException: JPEG-XR not yet supported
	at loci.formats.in.ZeissCZIReader$SubBlock.readPixelData(ZeissCZIReader.java:2940)
	at loci.formats.in.ZeissCZIReader$SubBlock.readPixelData(ZeissCZIReader.java:2912)
	at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:561)
	at loci.formats.FormatReader.setId(FormatReader.java:1426)
	at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:505)
	at loci.plugins.in.ImportProcess.execute(ImportProcess.java:143)
	at loci.plugins.in.Importer.showDialogs(Importer.java:137)
	at loci.plugins.in.Importer.run(Importer.java:75)
	at loci.plugins.LociImporter.run(LociImporter.java:78)
	at ij.IJ.runUserPlugIn(IJ.java:212)
	at ij.IJ.runPlugIn(IJ.java:176)
	at ij.Executer.runCommand(Executer.java:132)
	at ij.Executer.run(Executer.java:65)
	at java.lang.Thread.run(Thread.java:662)

Information about your version of Java:

  os.arch => amd64
  os.name => Windows NT (unknown)
  os.version => 6.2
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: CHECK_TURNED_OFF

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: C:\Users\labo\Desktop\FIJI-W~1\Fiji.app/java/win64/jdk1.6.0_24//jre
  imagej.dir => C:\Users\labo\Desktop\FIJI-W~1\Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150722045527)
Fiji: http://fiji.sc/update/ (last check:20150724215809)

Files not up-to-date:
  962dcdd5 (NOT_INSTALLED) 20150724150246 plugins/bio-formats_plugins-5.1.3.jar
  e6a75ba9 (LOCAL_ONLY) 20150731140108 plugins/bioformats_package.jar