When you install a macro text file via Plugins > Macros > Install..., the corresponding macro command appears in that submenu, but all the menu entries below the first separator (i.e. all the Fiji-specific menu entries) disappear.

Upon restart, all standard menu entries are back, but the installed macro is missing.

Information about your version of Java:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.10.5
  java.version => 1.8.0_51
  java.vendor => Oracle Corporation
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.8.0_51-b16
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 25.51-b03
  java.vm.vendor => Oracle Corporation
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.8
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: UP_TO_DATE

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: /Library/Java/JavaVirtualMachines/jdk1.8.0_51.jdk/Contents/Home//jre
  imagej.dir => /Users/eglinger/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150813211940)
Fiji: http://fiji.sc/update/ (last check:20150814225156)
Angiogenesis: http://sites.imagej.net/Angiogenesis/ (last check:20141016170027)
Bio-Formats: http://sites.imagej.net/Bio-Formats/ (last check:20150820032643)
BioVoxxel: http://sites.imagej.net/BioVoxxel/ (last check:20150819111801)
IBMP-CNRS: http://www-ibmp.u-strasbg.fr/fijiupdates/ (last check:20150318110643)
LOCI: http://sites.imagej.net/LOCI/ (last check:20150428235912)
Morphology: http://sites.imagej.net/Landini/ (last check:20140723165558)
OMERO 5.0: http://sites.imagej.net/OMERO-5.0/ (last check:20150428003810)
ScientiFig: http://sites.imagej.net/Aigouy/ (last check:20150820172346)