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Bug 1184 - Performance issues on El Capitan
Performance issues on El Capitan
Status: RESOLVED DUPLICATE of bug 1114
Product: Fiji
Classification: Unclassified
Component: ImageJ2
unspecified
Macintosh Mac OS
: P4 normal
Assigned To: Curtis Rueden
Depends on:
Blocks:
 
Reported: 2015-11-05 02:47 CST by Radoslaw Ejsmont
Modified: 2015-11-06 04:31 CST
3 users (show)

See Also:

Description Radoslaw Ejsmont 2015-11-05 02:47:10 CST
Since a few updated (sorry, cannot pinpoint exactly) I see huge performance drop and large idle memory use of Fiji. I know it's quite unspecific, but I was able to handle multiple 90-slice 1024x1024 stacks open without problems. Now after a few simple ops on 10-slice images open I peak at >4GB RAM used by Fiji. Could this be garbage collection problem?

Information about your version of Java:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.11.1
  java.version => 1.8.0_51
  java.vendor => Oracle Corporation
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.8.0_51-b16
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 25.51-b03
  java.vm.vendor => Oracle Corporation
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.8
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: /Library/Java/JavaVirtualMachines/jdk1.8.0_51.jdk/Contents/Home//jre
  imagej.dir => /Applications/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20151026205651)
Fiji: http://update.fiji.sc/ (last check:20151104170711)
3D ImageJ Suite: http://sites.imagej.net/Tboudier/ (last check:20151103085731)

Files not up-to-date:
  968c6425 (MODIFIED) 20151103165434 Contents/Info.plist
  3af43208 (MODIFIED) 20150906115145 jars/jython-shaded-2.7.0.jar
  e85a2018 (LOCAL_ONLY) 20150121223046 plugins/DeconvolutionLab/DeconvolutionLab_.jar
  71331805 (LOCAL_ONLY) 20100820154940 plugins/jacop_.jar
Comment 1 Radoslaw Ejsmont 2015-11-05 02:50:11 CST
Could be a duplicate of Bug 1114...

*** This bug has been marked as a duplicate of bug 1114 ***
Comment 2 Wayne Rasband 2015-11-05 23:04:39 CST
Do you see these problems with the version of ImageJ bundled with Java 1.8.0_60, available at <http://imagej.nih.gov/ij/download.html>?
Comment 3 Radoslaw Ejsmont 2015-11-06 04:09:18 CST
No, same tasks run with Java-bundled ImageJ run just fine. Should I downgrade my and give it a try?
Comment 4 Radoslaw Ejsmont 2015-11-06 04:31:02 CST
Problem exists with java version "1.8.0_66". Have not tried 1.8.0_60 yet.