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Bug 1210 - trakem: import stack fails to complete
trakem: import stack fails to complete
Status: NEW
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Windows
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2015-12-29 04:28 CST by Felix
Modified: 2015-12-29 04:28 CST
1 user (show)

See Also:

Description Felix 2015-12-29 04:28:58 CST
When importing a stack (drag and drop into a blank project)

the following error occurs:

[ERROR] Uncaught exception in thread Thread[T2-Canvas-Offscreen,5,main]
java.lang.NoClassDefFoundError: javax/vecmath/Tuple3d
	at ini.trakem2.display.Bucket.find(Bucket.java:211) ~[TrakEM2_-1.0g.jar:1.0g]
	at ini.trakem2.display.Bucket.find(Bucket.java:194) ~[TrakEM2_-1.0g.jar:1.0g]
	at ini.trakem2.display.Layer.find(Layer.java:657) ~[TrakEM2_-1.0g.jar:1.0g]
	at ini.trakem2.display.DisplayCanvas.gatherDisplayables(DisplayCanvas.java:2482) ~[TrakEM2_-1.0g.jar:1.0g]
	at ini.trakem2.display.DisplayCanvas.paintOffscreen(DisplayCanvas.java:2577) ~[TrakEM2_-1.0g.jar:1.0g]
	at ini.trakem2.display.DisplayCanvas$OffscreenThread.paint(DisplayCanvas.java:2452) ~[TrakEM2_-1.0g.jar:1.0g]
	at ini.trakem2.display.AbstractOffscreenThread.run(AbstractOffscreenThread.java:55) ~[TrakEM2_-1.0g.jar:1.0g]
Caused by: java.lang.ClassNotFoundException: javax.vecmath.Tuple3d
	at java.net.URLClassLoader.findClass(URLClassLoader.java:381) ~[na:1.8.0_66]
	at java.lang.ClassLoader.loadClass(ClassLoader.java:424) ~[na:1.8.0_66]
	at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331) ~[na:1.8.0_66]
	at java.lang.ClassLoader.loadClass(ClassLoader.java:357) ~[na:1.8.0_66]
	... 7 common frames omitted
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jars/win32/gluegen-rt-2.3.2-natives-windows-i586.jar done[K
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jars/win32/jocl-2.3.2-natives-windows-i586.jar done[K
jars/win32/jogl-all-2.3.2-natives-windows-i586.jar done[K
Done: Checksummer[K

Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.8.0_66
  java.vendor => Oracle Corporation
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.8.0_66-b18
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 25.66-b18
  java.vm.vendor => Oracle Corporation
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.8
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: C:\Program Files\Java\jdk1.8.0_66/jre
  imagej.dir => C:\Users\Public\Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20151222031554)
Fiji: http://update.fiji.sc/ (last check:20151222052403)
Java-8: http://sites.imagej.net/Java-8/ (last check:20151222051830)

Files not up-to-date:
  d290c110 (LOCAL_ONLY) 20151218154910 jars/commons-io-2.4.jar
  c6325009 (LOCAL_ONLY) 20151218154940 jars/omero/imagej-omero-0.3.2.jar
  1445b008 (LOCAL_ONLY) 20151218154949 jars/omero/omero-client-5.1.2-ice35.jar
  2f2a824f (LOCAL_ONLY) 20151218154950 jars/omero/scijava-log-slf4j-1.0.0.jar
  928ffe97 (LOCAL_ONLY) 20151218154912 plugins/Adapt__v1.146.jar
  8808d802 (LOCAL_ONLY) 20151218154909 plugins/BioVoxxel_Plugins.jar
  bae2315e (LOCAL_ONLY) 20151218154910 plugins/Data_Analysis.jar
  4c4c0e80 (LOCAL_ONLY) 20151218154912 plugins/IA_Class_Library_v1.123.jar
  1c348610 (LOCAL_ONLY) 20151218154911 plugins/Particle_Tracker_Library_v1.125.jar
  fe58c8cc (LOCAL_ONLY) 20151218154643 plugins/jars/nanozoomer-1.0.0.jar
  8e8db316 (LOCAL_ONLY) 20151218154907 plugins/mcib3d-suite/mcib3d-core.jar
  a4ccc1f2 (LOCAL_ONLY) 20151218154907 plugins/mcib3d-suite/mcib3d_plugins.jar