NOTICE! This is a static HTML version of a legacy Fiji BugZilla bug.

The Fiji project now uses GitHub Issues for issue tracking.

Please file all new issues there.

Bug 26 - 3D viewer crashes on Linux 64 bits
3D viewer crashes on Linux 64 bits
Status: RESOLVED FIXED
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Linux
: P2 major
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2009-01-07 17:59 CST by Ignacio Arganda
Modified: 2009-07-09 19:32 CDT
2 users (show)

See Also:

Description Ignacio Arganda 2009-01-07 17:59:25 CST
3D provokes Fiji to crash when rendering any volume.The log file is:

#
# An unexpected error has been detected by Java Runtime Environment:
#
#  SIGSEGV (0xb) at pc=0x00007f76c1718ac9, pid=18353, tid=36448592
#
# Java VM: Java HotSpot(TM) 64-Bit Server VM (10.0-b19 mixed mode linux-amd64)
# Problematic frame:
# C  [libdricore.so+0x92ac9]
#
# If you would like to submit a bug report, please visit:
#   http://java.sun.com/webapps/bugreport/crash.jsp
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#

---------------  T H R E A D  ---------------

Current thread (0x00000000027dc800):  JavaThread "J3D-Renderer-1" [_thread_in_native, id=18822, stack(0x00000000021c2000,0x00000000022c3000)]

siginfo:si_signo=SIGSEGV: si_errno=0, si_code=1 (SEGV_MAPERR), si_addr=0x0000000000000238

Registers:
RAX=0x000000000000008e, RBX=0x0000000000000000, RCX=0x0000000000000000, RDX=0x0000000000000000
RSP=0x00000000022b8660, RBP=0x00007f76c0878010, RSI=0x00000000023c3530, RDI=0x0000000000000000
R8 =0x00007f76c0889020, R9 =0x00000000022b8690, R10=0x00007f76c0885020, R11=0x000000000000002a
R12=0x00000000023c3530, R13=0x000000000000002a, R14=0x00007f76c0889020, R15=0x00007f76c0885020
RIP=0x00007f76c1718ac9, EFL=0x0000000000010206, CSGSFS=0xffff000000000033, ERR=0x0000000000000006
  TRAPNO=0x000000000000000e

Top of Stack: (sp=0x00000000022b8660)
0x00000000022b8660:   00007f76c2e4f050 00007f76c178e663
0x00000000022b8670:   0000000000000000 00007f76c178db9b
0x00000000022b8680:   00007f76c088d020 00000000022b8690
0x00000000022b8690:   0000000000000000 0000000000000000
0x00000000022b86a0:   00000000022c0800 00007f76c0c2f020
0x00000000022b86b0:   0000000000000000 0000000000000000
0x00000000022b86c0:   0000000000000000 0000000000000000
0x00000000022b86d0:   0000000000000000 0000000000000000
0x00000000022b86e0:   0000000000000000 0000000000000000
0x00000000022b86f0:   0000000000000000 0000000000000000
0x00000000022b8700:   0000000000000000 0000000000000000
0x00000000022b8710:   0000000000000000 0000000000000000
0x00000000022b8720:   0000000000000000 0000000000000000
0x00000000022b8730:   0000000000000000 0000000000000000
0x00000000022b8740:   0000000000000000 0000000000000000
0x00000000022b8750:   0000000000000000 0000000000000000
0x00000000022b8760:   0000000000000000 0000000000000000
0x00000000022b8770:   0000000000000000 0000000000000000
0x00000000022b8780:   0000000000000000 0000000000000000
0x00000000022b8790:   0000000000000000 0000000000000000
0x00000000022b87a0:   0000000000000000 0000000000000000
0x00000000022b87b0:   0000000000000000 0000000000000000
0x00000000022b87c0:   0000000000000000 0000000000000000
0x00000000022b87d0:   0000000000000000 0000000000000000
0x00000000022b87e0:   0000000000000000 0000000000000000
0x00000000022b87f0:   0000000000000000 0000000000000000
0x00000000022b8800:   0000000000000000 0000000000000000
0x00000000022b8810:   0000000000000000 0000000000000000
0x00000000022b8820:   0000000000000000 0000000000000000
0x00000000022b8830:   0000000000000000 0000000000000000
0x00000000022b8840:   0000000000000000 0000000000000000
0x00000000022b8850:   0000000000000000 0000000000000000 

Instructions: (pc=0x00007f76c1718ac9)
0x00007f76c1718ab9:   ba 0f af 46 3c 48 8b 4e 60 48 01 d0 41 8b 14 b9
0x00007f76c1718ac9:   89 14 81 48 ff c7 49 83 c0 04 41 39 fb 77 d0 5b 

Stack: [0x00000000021c2000,0x00000000022c3000],  sp=0x00000000022b8660,  free space=985k
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
C  [libdricore.so+0x92ac9]

Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
v  ~BufferBlob::Interpreter
v  ~BufferBlob::Interpreter
v  ~BufferBlob::Interpreter
v  ~BufferBlob::Interpreter
v  ~BufferBlob::Interpreter
v  ~BufferBlob::Interpreter
v  ~BufferBlob::Interpreter
v  ~BufferBlob::Interpreter
v  ~BufferBlob::Interpreter
v  ~BufferBlob::Interpreter
v  ~BufferBlob::Interpreter
v  ~BufferBlob::Interpreter
v  ~BufferBlob::Interpreter
v  ~BufferBlob::Interpreter
v  ~BufferBlob::Interpreter
v  ~BufferBlob::Interpreter
v  ~BufferBlob::StubRoutines (1)

---------------  P R O C E S S  ---------------

Java Threads: ( => current thread )
  0x00007f76c8b56400 JavaThread "Thread-48" [_thread_blocked, id=18832, stack(0x00007f76c0c7c000,0x00007f76c0d7d000)]
  0x00007f76c8564c00 JavaThread "J3D-InputDeviceScheduler-1" [_thread_blocked, id=18831, stack(0x00007f76c0d7d000,0x00007f76c0e7e000)]
  0x00007f76c8563c00 JavaThread "J3D-SoundSchedulerUpdateThread-1" [_thread_blocked, id=18830, stack(0x00007f76c0e7e000,0x00007f76c0f7f000)]
  0x00007f76c8609400 JavaThread "J3D-RenderStructureUpdateThread-1" [_thread_blocked, id=18829, stack(0x00007f76c0f7f000,0x00007f76c1080000)]
  0x00007f76c868fc00 JavaThread "J3D-BehaviorScheduler-1" [_thread_blocked, id=18828, stack(0x00007f76c1080000,0x00007f76c1181000)]
  0x00007f76c8786000 JavaThread "J3D-TransformStructureUpdateThread-1" [_thread_blocked, id=18827, stack(0x00007f76c1181000,0x00007f76c1282000)]
  0x00007f76c8ac4c00 JavaThread "J3D-RenderingEnvironmentStructureUpdateThread-1" [_thread_blocked, id=18826, stack(0x00007f76c1282000,0x00007f76c1383000)]
  0x00007f76c9069400 JavaThread "J3D-SoundStructureUpdateThread-1" [_thread_blocked, id=18825, stack(0x00007f76c1383000,0x00007f76c1484000)]
  0x00007f76c9068c00 JavaThread "J3D-GeometryStructureUpdateThread-1" [_thread_blocked, id=18824, stack(0x00007f76c1484000,0x00007f76c1585000)]
  0x00007f76c84be800 JavaThread "J3D-BehaviorStructureUpdateThread-1" [_thread_blocked, id=18823, stack(0x00007f76c1585000,0x00007f76c1686000)]
=>0x00000000027dc800 JavaThread "J3D-Renderer-1" [_thread_in_native, id=18822, stack(0x00000000021c2000,0x00000000022c3000)]
  0x0000000002490400 JavaThread "J3D-MasterControl-1" [_thread_blocked, id=18821, stack(0x00000000020c1000,0x00000000021c2000)]
  0x000000000248fc00 JavaThread "J3D-NotificationThread" [_thread_blocked, id=18820, stack(0x000000000639b000,0x000000000649c000)]
  0x000000000248f800 JavaThread "J3D-TimerThread" [_thread_blocked, id=18819, stack(0x0000000001dd2000,0x0000000001ed3000)]
  0x00007f76c27c2c00 JavaThread "J3D-RenderingAttributesStructureUpdateThread" [_thread_blocked, id=18818, stack(0x000000000562b000,0x000000000572c000)]
  0x00007f76c2fbb800 JavaThread "SliceSelector" [_thread_blocked, id=18816, stack(0x000000000189c000,0x000000000199d000)]
  0x000000000241e800 JavaThread "TimerQueue" daemon [_thread_blocked, id=18375, stack(0x0000000005eb1000,0x0000000005fb2000)]
  0x000000000236c000 JavaThread "DestroyJavaVM" [_thread_blocked, id=18353, stack(0x00007fffb871e000,0x00007fffb881e000)]
  0x00007f76c302b400 JavaThread "SocketListener" [_thread_in_native, id=18372, stack(0x0000000005921000,0x0000000005a22000)]
  0x00000000026d5000 JavaThread "AWT-EventQueue-0" [_thread_blocked, id=18370, stack(0x0000000001a9e000,0x0000000001b9f000)]
  0x00007f76c3071800 JavaThread "AWT-Shutdown" [_thread_blocked, id=18369, stack(0x000000000199d000,0x0000000001a9e000)]
  0x00007f76c81c9c00 JavaThread "AWT-XAWT" daemon [_thread_in_native, id=18367, stack(0x0000000003abe000,0x0000000003bbf000)]
  0x00007f76c811ac00 JavaThread "Java2D Disposer" daemon [_thread_blocked, id=18366, stack(0x000000000510d000,0x000000000520e000)]
  0x00007f76c8060c00 JavaThread "Low Memory Detector" daemon [_thread_blocked, id=18364, stack(0x0000000007456000,0x0000000007557000)]
  0x00007f76c805e000 JavaThread "CompilerThread1" daemon [_thread_blocked, id=18363, stack(0x000000000169a000,0x000000000179b000)]
  0x00007f76c805d000 JavaThread "CompilerThread0" daemon [_thread_blocked, id=18362, stack(0x0000000001599000,0x000000000169a000)]
  0x00000000023a4400 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=18361, stack(0x0000000007d90000,0x0000000007e91000)]
  0x00007f76c8059c00 JavaThread "Finalizer" daemon [_thread_blocked, id=18360, stack(0x0000000001498000,0x0000000001599000)]
  0x00007f76c8058800 JavaThread "Reference Handler" daemon [_thread_blocked, id=18359, stack(0x00000000046a7000,0x00000000047a8000)]

Other Threads:
  0x00007f76c8053400 VMThread [stack: 0x0000000002d2d000,0x0000000002e2e000] [id=18358]
  0x00007f76c8063000 WatcherThread [stack: 0x000000000179b000,0x000000000189c000] [id=18365]

VM state:not at safepoint (normal execution)

VM Mutex/Monitor currently owned by a thread: None

Heap
 PSYoungGen      total 1226432K, used 136170K [0x00007f7ebcb60000, 0x00007f7f0e390000, 0x00007f82ad800000)
  eden space 1125440K, 12% used [0x00007f7ebcb60000,0x00007f7ec505a9d8,0x00007f7f01670000)
  from space 100992K, 0% used [0x00007f7f01670000,0x00007f7f01670000,0x00007f7f07910000)
  to   space 105024K, 0% used [0x00007f7f07d00000,0x00007f7f07d00000,0x00007f7f0e390000)
 PSOldGen        total 1379584K, used 149650K [0x00007f76db200000, 0x00007f772f540000, 0x00007f7ebcb60000)
  object space 1379584K, 10% used [0x00007f76db200000,0x00007f76e4424860,0x00007f772f540000)
 PSPermGen       total 24960K, used 24819K [0x00007f76d5e00000, 0x00007f76d7660000, 0x00007f76db200000)
  object space 24960K, 99% used [0x00007f76d5e00000,0x00007f76d763cdb0,0x00007f76d7660000)

Dynamic libraries:
00110000-00117000 r-xp 00000000 08:04 7538758                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/native_threads/libhpi.so
00117000-00218000 ---p 00007000 08:04 7538758                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/native_threads/libhpi.so
00218000-0021a000 rw-p 00008000 08:04 7538758                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/native_threads/libhpi.so
0021a000-0021b000 rw-p 0021a000 00:00 0 
0021b000-00228000 r-xp 00000000 08:04 7514212                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libverify.so
00228000-00327000 ---p 0000d000 08:04 7514212                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libverify.so
00327000-0032a000 rw-p 0000c000 08:04 7514212                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libverify.so
0032a000-00335000 rwxp 0032a000 00:00 0 
00335000-003ea000 rwxp 00335000 00:00 0 
00400000-0040a000 r-xp 00000000 08:04 7260233                            /home/marta/Fiji.app/fiji-linux64
0040a000-00432000 r-xp 00000000 08:04 7514197                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libjava.so
00432000-00532000 ---p 00028000 08:04 7514197                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libjava.so
00532000-00539000 rw-p 00028000 08:04 7514197                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libjava.so
00539000-00546000 rwxp 00539000 00:00 0 
00546000-00563000 rwxp 00546000 00:00 0 
0060a000-0060b000 rw-p 0000a000 08:04 7260233                            /home/marta/Fiji.app/fiji-linux64
0060b000-0060d000 rw-p 0060b000 00:00 0 
0060d000-00d02000 r-xp 00000000 08:04 7514186                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/server/libjvm.so
00d02000-00e01000 ---p 006f5000 08:04 7514186                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/server/libjvm.so
00e01000-00f4b000 rw-p 006f4000 08:04 7514186                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/server/libjvm.so
00f4b000-00f88000 rw-p 00f4b000 00:00 0 
00f88000-00f94000 r-xp 00000000 08:04 2375707                            /lib64/libnss_files-2.9.so
00f94000-01193000 ---p 0000c000 08:04 2375707                            /lib64/libnss_files-2.9.so
01193000-01194000 r--p 0000b000 08:04 2375707                            /lib64/libnss_files-2.9.so
01194000-01195000 rw-p 0000c000 08:04 2375707                            /lib64/libnss_files-2.9.so
01195000-01196000 ---p 01195000 00:00 0 
01196000-01296000 rwxp 01196000 00:00 0 
01296000-01297000 ---p 01296000 00:00 0 
01297000-01397000 rwxp 01297000 00:00 0 
01397000-01398000 ---p 01397000 00:00 0 
01398000-01498000 rwxp 01398000 00:00 0 
01498000-0149b000 ---p 01498000 00:00 0 
0149b000-01599000 rwxp 0149b000 00:00 0 
01599000-0159c000 ---p 01599000 00:00 0 
0159c000-0169a000 rwxp 0159c000 00:00 0 
0169a000-0169d000 ---p 0169a000 00:00 0 
0169d000-0179b000 rwxp 0169d000 00:00 0 
0179b000-0179c000 ---p 0179b000 00:00 0 
0179c000-0189c000 rwxp 0179c000 00:00 0 
0189c000-0189f000 ---p 0189c000 00:00 0 
0189f000-0199d000 rwxp 0189f000 00:00 0 
0199d000-019a0000 ---p 0199d000 00:00 0 
019a0000-01a9e000 rwxp 019a0000 00:00 0 
01a9e000-01aa1000 ---p 01a9e000 00:00 0 
01aa1000-01b9f000 rwxp 01aa1000 00:00 0 
01b9f000-01bcb000 r-xp 00000000 08:04 7514208                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libjpeg.so
01bcb000-01ccb000 ---p 0002c000 08:04 7514208                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libjpeg.so
01ccb000-01cd1000 rw-p 0002c000 08:04 7514208                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libjpeg.so
01cd1000-01cd4000 rwxp 01cd1000 00:00 0 
01cd4000-01dd2000 rwxp 01cd4000 00:00 0 
01dd2000-01dd5000 ---p 01dd2000 00:00 0 
01dd5000-01ed3000 rwxp 01dd5000 00:00 0 
01f1d000-01f9b000 r-xp 00000000 08:04 7514204                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libfontmanager.so
01f9b000-0209a000 ---p 0007e000 08:04 7514204                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libfontmanager.so
0209a000-020b0000 rw-p 0007d000 08:04 7514204                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libfontmanager.so
020b0000-020c1000 rw-p 020b0000 00:00 0 
020c1000-020c4000 ---p 020c1000 00:00 0 
020c4000-021c2000 rwxp 020c4000 00:00 0 
021c2000-021c5000 ---p 021c2000 00:00 0 
021c5000-022c3000 rwxp 021c5000 00:00 0 
02355000-02808000 rw-p 02355000 00:00 0                                  [heap]
0280d000-02897000 r-xp 00000000 08:04 7514210                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libawt.so
02897000-02996000 ---p 0008a000 08:04 7514210                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libawt.so
02996000-029af000 rw-p 00089000 08:04 7514210                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libawt.so
029af000-029d3000 rw-p 029af000 00:00 0 
02a3e000-02a51000 r-xp 00000000 08:04 7514203                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libnet.so
02a51000-02b52000 ---p 00013000 08:04 7514203                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libnet.so
02b52000-02b55000 rw-p 00014000 08:04 7514203                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libnet.so
02d2d000-02d2e000 ---p 02d2d000 00:00 0 
02d2e000-02e2e000 rwxp 02d2e000 00:00 0 
02e71000-02e91000 r-xp 00000000 08:04 7514223                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libj3dcore-ogl.so
02e91000-02f90000 ---p 00020000 08:04 7514223                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libj3dcore-ogl.so
02f90000-02f91000 rw-p 0001f000 08:04 7514223                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libj3dcore-ogl.so
02ff6000-02ff7000 ---p 02ff6000 00:00 0 
02ff7000-030f7000 rwxp 02ff7000 00:00 0 
03316000-03356000 r-xp 00000000 08:04 7538762                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/xawt/libmawt.so
03356000-03456000 ---p 00040000 08:04 7538762                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/xawt/libmawt.so
03456000-03461000 rw-p 00040000 08:04 7538762                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/xawt/libmawt.so
03461000-03462000 rw-p 03461000 00:00 0 
035da000-03626000 r-xp 00000000 08:04 7514191                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libcmm.so
03626000-03726000 ---p 0004c000 08:04 7514191                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libcmm.so
03726000-03733000 rw-p 0004c000 08:04 7514191                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libcmm.so
03733000-03734000 rw-p 03733000 00:00 0 
03abe000-03ac1000 ---p 03abe000 00:00 0 
03ac1000-03bbf000 rwxp 03ac1000 00:00 0 
041c3000-041d1000 r-xp 00000000 08:04 7514189                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libzip.so
041d1000-042d3000 ---p 0000e000 08:04 7514189                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libzip.so
042d3000-042d6000 rw-p 00010000 08:04 7514189                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libzip.so
042d6000-042d7000 rw-p 042d6000 00:00 0 
046a7000-046aa000 ---p 046a7000 00:00 0 
046aa000-047a8000 rwxp 046aa000 00:00 0 
04e92000-04e93000 r-xp 00000000 08:04 7514224                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libjawt.so
04e93000-04f92000 ---p 00001000 08:04 7514224                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libjawt.so
04f92000-04f93000 rw-p 00000000 08:04 7514224                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libjawt.so
0510d000-05110000 ---p 0510d000 00:00 0 
05110000-0520e000 rwxp 05110000 00:00 0 
0562b000-0562e000 ---p 0562b000 00:00 0 
0562e000-0572c000 rwxp 0562e000 00:00 0 
05921000-05924000 ---p 05921000 00:00 0 
05924000-05a22000 rwxp 05924000 00:00 0 
05eb1000-05eb4000 ---p 05eb1000 00:00 0 
05eb4000-05fb2000 rwxp 05eb4000 00:00 0 
0639b000-0639e000 ---p 0639b000 00:00 0 
0639e000-0649c000 rwxp 0639e000 00:00 0 
06c0e000-06c15000 r-xp 00000000 08:04 7514190                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libnio.so
06c15000-06d14000 ---p 00007000 08:04 7514190                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libnio.so
06d14000-06d16000 rw-p 00006000 08:04 7514190                            /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/amd64/libnio.so
07456000-07459000 ---p 07456000 00:00 0 
07459000-07557000 rwxp 07459000 00:00 0 
07d90000-07d93000 ---p 07d90000 00:00 0 
07d93000-07e91000 rwxp 07d93000 00:00 0 
3107000000-3107020000 r-xp 00000000 08:04 2375906                        /lib64/ld-2.9.so
310721f000-3107220000 r--p 0001f000 08:04 2375906                        /lib64/ld-2.9.so
3107220000-3107221000 rw-p 00020000 08:04 2375906                        /lib64/ld-2.9.so
3108400000-3108568000 r-xp 00000000 08:04 2376010                        /lib64/libc-2.9.so
3108568000-3108768000 ---p 00168000 08:04 2376010                        /lib64/libc-2.9.so
3108768000-310876c000 r--p 00168000 08:04 2376010                        /lib64/libc-2.9.so
310876c000-310876d000 rw-p 0016c000 08:04 2376010                        /lib64/libc-2.9.so
310876d000-3108772000 rw-p 310876d000 00:00 0 
3108800000-3108884000 r-xp 00000000 08:04 2376048                        /lib64/libm-2.9.so
3108884000-3108a83000 ---p 00084000 08:04 2376048                        /lib64/libm-2.9.so
3108a83000-3108a84000 r--p 00083000 08:04 2376048                        /lib64/libm-2.9.so
3108a84000-3108a85000 rw-p 00084000 08:04 2376048                        /lib64/libm-2.9.so
3108c00000-3108c02000 r-xp 00000000 08:04 2376043                        /lib64/libdl-2.9.so
3108c02000-3108e02000 ---p 00002000 08:04 2376043                        /lib64/libdl-2.9.so
3108e02000-3108e03000 r--p 00002000 08:04 2376043                        /lib64/libdl-2.9.so
3108e03000-3108e04000 rw-p 00003000 08:04 2376043                        /lib64/libdl-2.9.so
3109000000-3109017000 r-xp 00000000 08:04 2376038                        /lib64/libpthread-2.9.so
3109017000-3109216000 ---p 00017000 08:04 2376038                        /lib64/libpthread-2.9.so
3109216000-3109217000 r--p 00016000 08:04 2376038                        /lib64/libpthread-2.9.so
3109217000-3109218000 rw-p 00017000 08:04 2376038                        /lib64/libpthread-2.9.so
3109218000-310921c000 rw-p 3109218000 00:00 0 
3109800000-310981a000 r-xp 00000000 08:04 2376045                        /lib64/libselinux.so.1
310981a000-3109a19000 ---p 0001a000 08:04 2376045                        /lib64/libselinux.so.1
3109a19000-3109a1a000 r--p 00019000 08:04 2376045                        /lib64/libselinux.so.1
3109a1a000-3109a1b000 rw-p 0001a000 08:04 2376045                        /lib64/libselinux.so.1
3109a1b000-3109a1c000 rw-p 3109a1b000 00:00 0 
310a000000-310a008000 r-xp 00000000 08:04 2376039                        /lib64/librt-2.9.so
310a008000-310a207000 ---p 00008000 08:04 2376039                        /lib64/librt-2.9.so
310a207000-310a208000 r--p 00007000 08:04 2376039                        /lib64/librt-2.9.so
310a208000-310a209000 rw-p 00008000 08:04 2376039                        /lib64/librt-2.9.so
310ac00000-310ac02000 r-xp 00000000 08:04 13585372                       /usr/lib64/libXau.so.6.0.0
310ac02000-310ae01000 ---p 00002000 08:04 13585372                       /usr/lib64/libXau.so.6.0.0
310ae01000-310ae02000 rw-p 00001000 08:04 13585372                       /usr/lib64/libXau.so.6.0.0
310b400000-310b401000 r-xp 00000000 08:04 13585395                       /usr/lib64/libxcb-xlib.so.0.0.0
310b401000-310b600000 ---p 00001000 08:04 13585395                       /usr/lib64/libxcb-xlib.so.0.0.0
310b600000-310b601000 rw-p 00000000 08:04 13585395                       /usr/lib64/libxcb-xlib.so.0.0.0
310b800000-310b905000 r-xp 00000000 08:04 13585594                       /usr/lib64/libX11.so.6.2.0
310b905000-310bb05000 ---p 00105000 08:04 13585594                       /usr/lib64/libX11.so.6.2.0
310bb05000-310bb0b000 rw-p 00105000 08:04 13585594                       /usr/lib64/libX11.so.6.2.0
310bc00000-310bc1a000 r-xp 00000000 08:04 13585376                       /usr/lib64/libxcb.so.1.0.0
310bc1a000-310be1a000 ---p 0001a000 08:04 13585376                       /usr/lib64/libxcb.so.1.0.0
310be1a000-310be1b000 rw-p 0001a000 08:04 13585376                       /usr/lib64/libxcb.so.1.0.0
310c000000-310c005000 r-xp 00000000 08:04 13585374                       /usr/lib64/libXdmcp.so.6.0.0
310c005000-310c204000 ---p 00005000 08:04 13585374                       /usr/lib64/libXdmcp.so.6.0.0
310c204000-310c205000 rw-p 00004000 08:04 13585374                       /usr/lib64/libXdmcp.so.6.0.0
310c800000-310c827000 r-xp 00000000 08:04 2376050                        /lib64/libexpat.so.1.5.2
310c827000-310ca26000 ---p 00027000 08:04 2376050                        /lib64/libexpat.so.1.5.2
310ca26000-310ca29000 rw-p 00026000 08:04 2376050                        /lib64/libexpat.so.1.5.2
310d400000-310d410000 r-xp 00000000 08:04 13585627                       /usr/lib64/libXext.so.6.4.0
310d410000-310d610000 ---p 00010000 08:04 13585627                       /usr/lib64/libXext.so.6.4.0
310d610000-310d611000 rw-p 00010000 08:04 13585627                       /usr/lib64/libXext.so.6.4.0
310dc00000-310dc08000 r-xp 00000000 08:04 13585642                       /usr/lib64/libXi.so.6.0.0
310dc08000-310de08000 ---p 00008000 08:04 13585642                       /usr/lib64/libXi.so.6.0.0
310de08000-310de09000 rw-p 00008000 08:04 13585642                       /usr/lib64/libXi.so.6.0.0
310e000000-310e005000 r-xp 00000000 08:04 13585730                       /usr/lib64/libXfixes.so.3.1.0
310e005000-310e204000 ---p 00005000 08:04 13585730                       /usr/lib64/libXfixes.so.3.1.0
310e204000-310e205000 rw-p 00004000 08:04 13585730                       /usr/lib64/libXfixes.so.3.1.0
310e800000-310e809000 r-xp 00000000 08:04 13585596                       /usr/lib64/libXrender.so.1.3.0
310e809000-310ea08000 ---p 00009000 08:04 13585596                       /usr/lib64/libXrender.so.1.3.0
310ea08000-310ea09000 rw-p 00008000 08:04 13585596                       /usr/lib64/libXrender.so.1.3.0
3110e00000-3110e09000 r-xp 00000000 08:04 13585815                       /usr/lib64/libXcursor.so.1.0.2
3110e09000-3111009000 ---p 00009000 08:04 13585815                       /usr/lib64/libXcursor.so.1.0.2
3111009000-311100a000 rw-p 00009000 08:04 13585815                       /usr/lib64/libXcursor.so.1.0.2
3111e00000-3111e02000 r-xp 00000000 08:04 13585886                       /usr/lib64/libXdamage.so.1.1.0
3111e02000-3112001000 ---p 00002000 08:04 13585886                       /usr/lib64/libXdamage.so.1.1.0
3112001000-3112002000 rw-p 00001000 08:04 13585886                       /usr/lib64/libXdamage.so.1.1.0
3112a00000-3112a16000 r-xp 00000000 08:04 2376054                        /lib64/libnsl-2.9.so
3112a16000-3112c16000 ---p 00016000 08:04 2376054                        /lib64/libnsl-2.9.so
3112c16000-3112c17000 r--p 00016000 08:04 2376054                        /lib64/libnsl-2.9.so
3112c17000-3112c18000 rw-p 00017000 08:04 2376054                        /lib64/libnsl-2.9.so
3112c18000-3112c1a000 rw-p 3112c18000 00:00 0 
3113200000-3113214000 r-xp 00000000 08:04 2376055                        /lib64/libresolv-2.9.so
3113214000-3113414000 ---p 00014000 08:04 2376055                        /lib64/libresolv-2.9.so
3113414000-3113415000 r--p 00014000 08:04 2376055                        /lib64/libresolv-2.9.so
3113415000-3113416000 rw-p 00015000 08:04 2376055                        /lib64/libresolv-2.9.so
3113416000-3113418000 rw-p 3113416000 00:00 0 
3115a00000-3115a16000 r-xp 00000000 08:04 2376069                        /lib64/libgcc_s-4.3.2-20081105.so.1
3115a16000-3115c16000 ---p 00016000 08:04 2376069                        /lib64/libgcc_s-4.3.2-20081105.so.1
3115c16000-3115c17000 rw-p 00016000 08:04 2376069                        /lib64/libgcc_s-4.3.2-20081105.so.1
3117a00000-3117aee000 r-xp 00000000 08:04 13587872                       /usr/lib64/libstdc++.so.6.0.10
3117aee000-3117cee000 ---p 000ee000 08:04 13587872                       /usr/lib64/libstdc++.so.6.0.10
3117cee000-3117cf5000 r--p 000ee000 08:04 13587872                       /usr/lib64/libstdc++.so.6.0.10
3117cf5000-3117cf7000 rw-p 000f5000 08:04 13587872                       /usr/lib64/libstdc++.so.6.0.10
3117cf7000-3117d0a000 rw-p 3117cf7000 00:00 0 
3118600000-311866a000 r-xp 00000000 08:04 24010909                       /usr/lib64/libGL.so.1.2
311866a000-3118869000 ---p 0006a000 08:04 24010909                       /usr/lib64/libGL.so.1.2
3118869000-3118873000 rw-p 00069000 08:04 24010909                       /usr/lib64/libGL.so.1.2
3118873000-3118874000 rw-p 3118873000 00:00 0 
311b200000-311b209000 r-xp 00000000 08:04 24010908                       /usr/lib64/libdrm.so.2.3.0
311b209000-311b409000 ---p 00009000 08:04 24010908                       /usr/lib64/libdrm.so.2.3.0
311b409000-311b40a000 rw-p 00009000 08:04 24010908                       /usr/lib64/libdrm.so.2.3.0
311da00000-311da05000 r-xp 00000000 08:04 13586396                       /usr/lib64/libXxf86vm.so.1.0.0
311da05000-311dc04000 ---p 00005000 08:04 13586396                       /usr/lib64/libXxf86vm.so.1.0.0
311dc04000-311dc05000 rw-p 00004000 08:04 13586396                       /usr/lib64/libXxf86vm.so.1.0.0
311ee00000-311ee05000 r-xp 00000000 08:04 24010904                       /usr/lib64/libXtst.so.6.1.0
311ee05000-311f005000 ---p 00005000 08:04 24010904                       /usr/lib64/libXtst.so.6.1.0
311f005000-311f006000 rw-p 00005000 08:04 24010904                       /usr/lib64/libXtst.so.6.1.0
7f76c0738000-7f76c0c7c000 rw-p 7f76c0738000 00:00 0 
7f76c0c7c000-7f76c0c7f000 ---p 7f76c0c7c000 00:00 0 
7f76c0c7f000-7f76c0d7d000 rwxp 7f76c0c7f000 00:00 0 
7f76c0d7d000-7f76c0d80000 ---p 7f76c0d7d000 00:00 0 
7f76c0d80000-7f76c0e7e000 rwxp 7f76c0d80000 00:00 0 
7f76c0e7e000-7f76c0e81000 ---p 7f76c0e7e000 00:00 0 
7f76c0e81000-7f76c0f7f000 rwxp 7f76c0e81000 00:00 0 
7f76c0f7f000-7f76c0f82000 ---p 7f76c0f7f000 00:00 0 
7f76c0f82000-7f76c1080000 rwxp 7f76c0f82000 00:00 0 
7f76c1080000-7f76c1083000 ---p 7f76c1080000 00:00 0 
7f76c1083000-7f76c1181000 rwxp 7f76c1083000 00:00 0 
7f76c1181000-7f76c1184000 ---p 7f76c1181000 00:00 0 
7f76c1184000-7f76c1282000 rwxp 7f76c1184000 00:00 0 
7f76c1282000-7f76c1285000 ---p 7f76c1282000 00:00 0 
7f76c1285000-7f76c1383000 rwxp 7f76c1285000 00:00 0 
7f76c1383000-7f76c1386000 ---p 7f76c1383000 00:00 0 
7f76c1386000-7f76c1484000 rwxp 7f76c1386000 00:00 0 
7f76c1484000-7f76c1487000 ---p 7f76c1484000 00:00 0 
7f76c1487000-7f76c1585000 rwxp 7f76c1487000 00:00 0 
7f76c1585000-7f76c1588000 ---p 7f76c1585000 00:00 0 
7f76c1588000-7f76c1686000 rwxp 7f76c1588000 00:00 0 
7f76c1686000-7f76c1842000 r-xp 00000000 08:04 13639969                   /usr/lib64/dri/libdricore.so
7f76c1842000-7f76c1a42000 ---p 001bc000 08:04 13639969                   /usr/lib64/dri/libdricore.so
7f76c1a42000-7f76c1a59000 rw-p 001bc000 08:04 13639969                   /usr/lib64/dri/libdricore.so
7f76c1a59000-7f76c1a64000 rw-p 7f76c1a59000 00:00 0 
7f76c1a64000-7f76c1a77000 r-xp 00000000 08:04 13639977                   /usr/lib64/dri/swrast_dri.so
7f76c1a77000-7f76c1c77000 ---p 00013000 08:04 13639977                   /usr/lib64/dri/swrast_dri.so
7f76c1c77000-7f76c1c7a000 rw-p 00013000 08:04 13639977                   /usr/lib64/dri/swrast_dri.so
7f76c1c7a000-7f76c1c7b000 rw-p 7f76c1c7a000 00:00 0 
7f76c1c7b000-7f76c1c80000 r-xp 00000000 08:04 2375705                    /lib64/libnss_dns-2.9.so
7f76c1c80000-7f76c1e7f000 ---p 00005000 08:04 2375705                    /lib64/libnss_dns-2.9.so
7f76c1e7f000-7f76c1e80000 r--p 00004000 08:04 2375705                    /lib64/libnss_dns-2.9.so
7f76c1e80000-7f76c1e81000 rw-p 00005000 08:04 2375705                    /lib64/libnss_dns-2.9.so
7f76c1e8d000-7f76c1e90000 rw-s 00000000 00:08 14843921                   /SYSV00000000 (deleted)
7f76c1e90000-7f76c1e97000 r--s 00000000 08:04 13624125                   /usr/lib64/gconv/gconv-modules.cache
7f76c1e97000-7f76c2a0a000 rw-p 7f76c1e97000 00:00 0 
7f76c2a0a000-7f76c2a11000 r--s 00000000 08:04 35602955                   /var/cache/fontconfig/177aa5f8e4784b879645141d1d73ae7a-x86-64.cache-2
7f76c2a11000-7f76c2a18000 r--s 00000000 08:04 35602936                   /var/cache/fontconfig/f4023520196b2bc2c439adcafb2470ff-x86-64.cache-2
7f76c2a18000-7f76c2a1c000 r--s 00000000 08:04 35602565                   /var/cache/fontconfig/87f5e051180a7a75f16eb6fe7dbd3749-x86-64.cache-2
7f76c2a1c000-7f76c2a25000 r--s 00000000 08:04 35602544                   /var/cache/fontconfig/b79f3aaa7d385a141ab53ec885cc22a8-x86-64.cache-2
7f76c2a25000-7f76c2a28000 r--s 00000000 08:04 35602519                   /var/cache/fontconfig/5c755b2f27115486aa6359c84dd3cbda-x86-64.cache-2
7f76c2a28000-7f76c2a36000 r--s 00000000 08:04 35602518                   /var/cache/fontconfig/40c848d2bcd698028c81266d97f97863-x86-64.cache-2
7f76c2a36000-7f76c2a38000 r--s 00000000 08:04 35602517                   /var/cache/fontconfig/830f035fa84a65ce80e050178dbb630d-x86-64.cache-2
7f76c2a38000-7f76c2a39000 r--s 00000000 08:04 35602516                   /var/cache/fontconfig/81a173283b451552b599cfaafd6236bd-x86-64.cache-2
7f76c2a39000-7f76c2a3a000 r--s 00000000 08:04 35602515                   /var/cache/fontconfig/6cfc7d49b27ba7d3eb71ab86e04def2c-x86-64.cache-2
7f76c2a3a000-7f76c2a3b000 r--s 00000000 08:04 35602514                   /var/cache/fontconfig/044963cbb93fcb06c61d94a50dee394f-x86-64.cache-2
7f76c2a3b000-7f76c2a3c000 r--s 00000000 08:04 35602513                   /var/cache/fontconfig/b887eea8f1b96e1d899b44ed6681fc27-x86-64.cache-2
7f76c2a3c000-7f76c2a3d000 r--s 00000000 08:04 35602512                   /var/cache/fontconfig/860639f272b8b4b3094f9e399e41bccd-x86-64.cache-2
7f76c2a3d000-7f76c2a3e000 r--s 00000000 08:04 35602511                   /var/cache/fontconfig/211368abcb0ff835c229ff05c9ec01dc-x86-64.cache-2
7f76c2a3e000-7f76c2a3f000 r--s 00000000 08:04 35602510                   /var/cache/fontconfig/c46020d7221988a13df853d2b46304fc-x86-64.cache-2
7f76c2a3f000-7f76c2a40000 r--s 00000000 08:04 35602509                   /var/cache/fontconfig/b63c21b9c3e5b4a4009aa5966b421593-x86-64.cache-2
7f76c2a40000-7f76c2a41000 r--s 00000000 08:04 35602508                   /var/cache/fontconfig/df893b4576ad6107f9397134092c4059-x86-64.cache-2
7f76c2a41000-7f76c2a42000 r--s 00000000 08:04 35602507                   /var/cache/fontconfig/ff627ea95a65192232277bf7c8a56f23-x86-64.cache-2
7f76c2a42000-7f76c2a43000 r--s 00000000 08:04 35602506                   /var/cache/fontconfig/900402270e15d763a6e008bb2d4c7686-x86-64.cache-2
7f76c2a43000-7f76c2a44000 r--s 00000000 08:04 35602505                   /var/cache/fontconfig/2881ed3fd21ca306ddad6f9b0dd3189f-x86-64.cache-2
7f76c2a44000-7f76c2a45000 r--s 00000000 08:04 35602504                   /var/cache/fontconfig/e61abf8156cc476151baa07d67337cae-x86-64.cache-2
7f76c2a45000-7f76c2a49000 r--s 00000000 08:04 35602970                   /var/cache/fontconfig/b67b32625a2bb51b023d3814a918f351-x86-64.cache-2
7f76c2a49000-7f76c2a4b000 r--s 00000000 08:04 35602502                   /var/cache/fontconfig/d3379abda271c4acd2ad0c01f565d0b0-x86-64.cache-2
7f76c2a4b000-7f76c2a50000 r--s 00000000 08:04 35602501                   /var/cache/fontconfig/46b47dbc682d2ca4191e148ea7bde7f2-x86-64.cache-2
7f76c2a50000-7f76c2a51000 r--s 00000000 08:04 35602500                   /var/cache/fontconfig/b4d0b56f766d89640448751fcd18ec1e-x86-64.cache-2
7f76c2a51000-7f76c2a5a000 r--s 00000000 08:04 35602499                   /var/cache/fontconfig/12b26b760a24f8b4feb03ad48a333a72-x86-64.cache-2
7f76c2a5a000-7f76c2a61000 r--s 00000000 08:04 35602938                   /var/cache/fontconfig/766670f26ba71bf5eea34bac120eb600-x86-64.cache-2
7f76c2a61000-7f76c2a6c000 r--s 00000000 08:04 35602587                   /var/cache/fontconfig/e19de935dec46bbf3ed114ee4965548a-x86-64.cache-2
7f76c2a6c000-7f76c2a6d000 r--s 00000000 08:04 35602497                   /var/cache/fontconfig/1248881498ac025e45c3042f6afe9284-x86-64.cache-2
7f76c2a6d000-7f76c2a6f000 r--s 00000000 08:04 35602520                   /var/cache/fontconfig/8fd5071779cacc5b88f04796ea2b3c26-x86-64.cache-2
7f76c2a6f000-7f76c2c2a000 rw-s 00000000 00:08 14155790                   /SYSV00000000 (deleted)
7f76c2c2a000-7f76c2c39000 r--s 0012d000 08:04 7465037                    /home/marta/Fiji.app/jars/jfreechart-1.0.9.jar
7f76c2c39000-7f76c2d39000 rw-p 7f76c2c39000 00:00 0 
7f76c2d39000-7f76c2d40000 r--s 0010b000 08:04 7481431                    /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/resources.jar
7f76c2d40000-7f76c2d4b000 r--s 0015c000 08:04 7465032                    /home/marta/Fiji.app/jars/jpedalSTD.jar
7f76c2d4b000-7f76c2d4d000 r--s 00007000 08:04 7465044                    /home/marta/Fiji.app/jars/Jama-1.0.2.jar
7f76c2d4d000-7f76c2d5c000 r--s 00139000 08:04 7465040                    /home/marta/Fiji.app/jars/edu_mines_jtk.jar
7f76c2d5c000-7f76c2d5d000 r--s 0000b000 08:04 7465041                    /home/marta/Fiji.app/jars/jzlib-1.0.7.jar
7f76c2d5d000-7f76c2d60000 r--s 0002d000 08:04 7465030                    /home/marta/Fiji.app/jars/imagescience.jar
7f76c2d60000-7f76c2d7c000 r--s 001be000 08:04 7465035                    /home/marta/Fiji.app/jars/jython2.2.1/jython.jar
7f76c2d7c000-7f76c2d81000 r--s 00040000 08:04 7465038                    /home/marta/Fiji.app/jars/bsh-2.0b4.jar
7f76c2d81000-7f76c2d86000 r--s 00065000 08:04 7465046                    /home/marta/Fiji.app/jars/postgresql-8.2-506.jdbc3.jar
7f76c2d86000-7f76c2dd3000 r--s 003e1000 08:04 7465045                    /home/marta/Fiji.app/jars/jruby.jar
7f76c2dd3000-7f76c2de6000 r--s 0016d000 08:04 7465043                    /home/marta/Fiji.app/jars/jai_core.jar
7f76c2de6000-7f76c2de8000 r--s 0000b000 08:04 7465036                    /home/marta/Fiji.app/jars/Quick3dApplet-1.0.8.jar
7f76c2de8000-7f76c2dea000 r--s 0000f000 08:04 7465042                    /home/marta/Fiji.app/jars/clibwrapper_jiio.jar
7f76c2dea000-7f76c2e3f000 r--s 00662000 08:04 7260270                    /home/marta/Fiji.app/plugins/loci_tools.jar
7f76c2e3f000-7f76c2f3f000 rw-p 7f76c2e3f000 00:00 0 
7f76c2f3f000-7f76c2f46000 r--s 000b2000 08:04 7465033                    /home/marta/Fiji.app/jars/js.jar
7f76c2f46000-7f76c2f49000 r--s 00031000 08:04 7465039                    /home/marta/Fiji.app/jars/jai_codec.jar
7f76c2f49000-7f76c2f4f000 r--s 00046000 08:04 7465029                    /home/marta/Fiji.app/jars/jcommon-1.0.12.jar
7f76c2f4f000-7f76c2f5d000 r--s 00115000 08:04 7465027                    /home/marta/Fiji.app/jars/itext-1.3.jar
7f76c2f5d000-7f76c2f6c000 r--s 000ef000 08:04 7465028                    /home/marta/Fiji.app/jars/javac.jar
7f76c2f6c000-7f76c2f73000 r--s 00061000 08:04 7465031                    /home/marta/Fiji.app/jars/clojure.jar
7f76c2f73000-7f76c2f75000 r--s 00005000 08:04 7260265                    /home/marta/Fiji.app/plugins/Jython_Interpreter.jar
7f76c2f75000-7f76c2f76000 r--s 00005000 08:04 7260258                    /home/marta/Fiji.app/plugins/BeanShell_Interpreter.jar
7f76c2f76000-7f76c2f77000 r--s 00001000 08:04 7260264                    /home/marta/Fiji.app/plugins/Color_Histogram.jar
7f76c2f77000-7f76c2f79000 r--s 00017000 08:04 7260249                    /home/marta/Fiji.app/plugins/Image_5D.jar
7f76c2f79000-7f76c2f7a000 r--s 00005000 08:04 7260240                    /home/marta/Fiji.app/plugins/JRuby_Interpreter.jar
7f76c2f7a000-7f76c2f7b000 r--s 00000000 08:04 7260241                    /home/marta/Fiji.app/plugins/IJ_Robot.jar
7f76c2f7b000-7f76c2f7c000 r--s 00009000 08:04 7260243                    /home/marta/Fiji.app/plugins/CLI_.jar
7f76c2f7c000-7f76c2f7d000 r--s 0000c000 08:04 7260253                    /home/marta/Fiji.app/plugins/IO_.jar
7f76c2f7d000-7f76c2f7e000 r--s 00000000 08:04 7260250                    /home/marta/Fiji.app/plugins/3D_Distance_Transform.jar
7f76c2f7e000-7f76c2f7f000 r--s 0000b000 08:04 7260242                    /home/marta/Fiji.app/plugins/TransformJ_.jar
7f76c2f7f000-7f76c2f80000 r--s 00011000 08:04 7260261                    /home/marta/Fiji.app/plugins/Interactive_3D_Surface_Plot.jar
7f76c2f80000-7f76c2f81000 r--s 00006000 08:04 7260257                    /home/marta/Fiji.app/plugins/Clojure_Interpreter.jar
7f76c2f81000-7f76c2f82000 r--s 00004000 08:04 7260246                    /home/marta/Fiji.app/plugins/lens_correction.jar
7f76c2f82000-7f76c2f84000 r--s 0000c000 08:04 7260248                    /home/marta/Fiji.app/plugins/level_sets.jar
7f76c2f84000-7f76c2f85000 r--s 00001000 08:04 7260268                    /home/marta/Fiji.app/plugins/Analyze_Reader_Writer.jar
7f76c2f85000-7f76c2f86000 r--s 0001c000 08:04 7260256                    /home/marta/Fiji.app/plugins/View5D_.jar
7f76c2f86000-7f76c2f87000 r--s 00011000 08:04 7260272                    /home/marta/Fiji.app/plugins/Color_Inspector_3D.jar
7f76c2f87000-7f76c2f88000 r--s 00004000 08:04 7260254                    /home/marta/Fiji.app/plugins/Multi_Thresholder.jar
7f76c2f88000-7f76c2f96000 r--s 0010f000 08:04 7260269                    /home/marta/Fiji.app/plugins/VIB_.jar
7f76c2f96000-7f76c2f98000 r--s 00007000 08:04 7260239                    /home/marta/Fiji.app/plugins/SplineDeformationGenerator_.jar
7f76c2f98000-7f76c2f9a000 r--s 00014000 08:04 7260247                    /home/marta/Fiji.app/plugins/Stitching_.jar
7f76c2f9a000-7f76c2f9b000 r--s 00000000 08:04 7260262                    /home/marta/Fiji.app/plugins/Daltonize_.jar
7f76c2f9b000-7f76c2f9c000 r--s 0000f000 08:04 7260244                    /home/marta/Fiji.app/plugins/mpicbg_.jar
7f76c2f9c000-7f76c2fa4000 r--s 000cc000 08:04 7260267                    /home/marta/Fiji.app/plugins/TrakEM2_.jar
7f76c2fa4000-7f76c2fa5000 r--s 00005000 08:04 7260252                    /home/marta/Fiji.app/plugins/Javascript_.jar
7f76c2fa5000-7f76c30a5000 rw-p 7f76c2fa5000 00:00 0 
7f76c30a5000-7f76c30ab000 r--s 0010d000 08:04 7260237                    /home/marta/Fiji.app/ij.jar
7f76c30ab000-7f76c30ac000 r--s 00001000 08:04 7260235                    /home/marta/Fiji.app/misc/Fiji.jar
7f76c30ac000-7f76c30ba000 r--s 00192000 08:04 7661076                    /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/ext/j3dutils.jar
7f76c30ba000-7f76c7d9f000 r--p 00000000 08:04 24002561                   /usr/lib/locale/locale-archive
7f76c7d9f000-7f76c7e76000 rw-p 7f76c7d9f000 00:00 0 
7f76c7e76000-7f76c8000000 r--s 02de1000 08:04 7481423                    /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/rt.jar
7f76c8000000-7f76c93e9000 rw-p 7f76c8000000 00:00 0 
7f76c93e9000-7f76cc000000 ---p 7f76c93e9000 00:00 0 
7f76cc000000-7f76cc002000 r--s 0000e000 08:04 7260259                    /home/marta/Fiji.app/plugins/ij-ImageIO_.jar
7f76cc002000-7f76cc006000 r--s 00049000 08:04 7260255                    /home/marta/Fiji.app/plugins/LSM_Toolbox.jar
7f76cc006000-7f76cc008000 r--s 0003a000 08:04 7260229                    /home/marta/Fiji.app/plugins/bUnwarpJ_.jar
7f76cc008000-7f76cc00a000 r--s 00001000 08:04 7260266                    /home/marta/Fiji.app/plugins/register_virtual_stack_slices.jar
7f76cc00a000-7f76cc00c000 r--s 0000c000 08:04 7260245                    /home/marta/Fiji.app/plugins/Volume_Viewer.jar
7f76cc00c000-7f76cc00d000 r--s 00002000 08:04 7260271                    /home/marta/Fiji.app/plugins/M_I_P.jar
7f76cc00d000-7f76cc035000 rw-p 7f76cc00d000 00:00 0 
7f76cc035000-7f76cc2d7000 rwxp 7f76cc035000 00:00 0 
7f76cc2d7000-7f76cff42000 rwxp 7f76cc2d7000 00:00 0 
7f76cff42000-7f76cff4f000 rwxp 7f76cff42000 00:00 0 
7f76cff4f000-7f76cff6c000 rwxp 7f76cff4f000 00:00 0 
7f76cff6c000-7f76d020e000 rwxp 7f76cff6c000 00:00 0 
7f76d020e000-7f76d3e78000 rwxp 7f76d020e000 00:00 0 
7f76d3e78000-7f76d4105000 rwxp 7f76d3e78000 00:00 0 
7f76d4105000-7f76d5dff000 rwxp 7f76d4105000 00:00 0 
7f76d5dff000-7f76d7660000 rwxp 7f76d5dff000 00:00 0 
7f76d7660000-7f76db200000 rwxp 7f76d7660000 00:00 0 
7f76db200000-7f772f540000 rwxp 7f76db200000 00:00 0 
7f772f540000-7f7ebcb60000 rwxp 7f772f540000 00:00 0 
7f7ebcb60000-7f7f0e390000 rwxp 7f7ebcb60000 00:00 0 
7f7f0e390000-7f82ad800000 rwxp 7f7f0e390000 00:00 0 
7f82ad800000-7f82ad802000 r--s 00001000 08:04 7260260                    /home/marta/Fiji.app/plugins/Fiji_Updater.jar
7f82ad802000-7f82ad803000 r--s 0000c000 08:04 7260263                    /home/marta/Fiji.app/plugins/registration_3d.jar
7f82ad803000-7f82ad805000 r--s 0004e000 08:04 7661072                    /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/ext/vecmath.jar
7f82ad805000-7f82ada95000 rwxp 7f82ad805000 00:00 0 
7f82ada95000-7f82b0805000 rwxp 7f82ada95000 00:00 0 
7f82b0805000-7f82b0808000 rw-p 7f82b0805000 00:00 0 
7f82b0808000-7f82b0814000 r--s 002c7000 08:04 7661073                    /home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre/lib/ext/j3dcore.jar
7f82b0814000-7f82b081c000 rw-s 00000000 08:04 11223164                   /tmp/hsperfdata_marta/18353
7f82b081c000-7f82b081d000 rwxp 7f82b081c000 00:00 0 
7f82b081d000-7f82b081e000 r--p 7f82b081d000 00:00 0 
7f82b081e000-7f82b0820000 rw-p 7f82b081e000 00:00 0 
7fffb871e000-7fffb8721000 ---p 7fffb871e000 00:00 0 
7fffb8721000-7fffb881e000 rwxp 7ffffff01000 00:00 0                      [stack]
7fffb881e000-7fffb881f000 rw-p 7fffffffe000 00:00 0 
7fffb89fe000-7fffb89ff000 r-xp 7fffb89fe000 00:00 0                      [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0                  [vsyscall]

VM Arguments:
jvm_args: -Dpython.cachedir.skip=false -Dplugins.dir=/home/marta/Fiji.app -Xmx48422m 
java_command: <unknown>
Launcher Type: generic

Environment Variables:
JAVA_HOME=/home/marta/Fiji.app/java/linux-amd64/jdk1.6.0_04/jre
PATH=/usr/lib64/qt-3.3/bin:/usr/kerberos/bin:/usr/lib64/ccache:/usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/lib/:/home/marta/bin
USERNAME=marta
SHELL=/bin/bash
DISPLAY=:0.0

Signal Handlers:
SIGSEGV: [libjvm.so+0x661330], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGBUS: [libjvm.so+0x661330], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGFPE: [libjvm.so+0x504130], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGPIPE: [libjvm.so+0x504130], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGXFSZ: [libjvm.so+0x504130], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGILL: [libjvm.so+0x504130], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGUSR1: SIG_DFL, sa_mask[0]=0x00000000, sa_flags=0x00000000
SIGUSR2: [libjvm.so+0x5063a0], sa_mask[0]=0x00000000, sa_flags=0x10000004
SIGHUP: [libjvm.so+0x506100], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGINT: [libjvm.so+0x506100], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGTERM: [libjvm.so+0x506100], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGQUIT: [libjvm.so+0x506100], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004


---------------  S Y S T E M  ---------------

OS:Fedora release 10 (Cambridge)

uname:Linux 2.6.27.5-117.fc10.x86_64 #1 SMP Tue Nov 18 11:58:53 EST 2008 x86_64
libc:glibc 2.9 NPTL 2.9 
rlimit: STACK 10240k, CORE 0k, NPROC 1024, NOFILE 1024, AS infinity
load average:1.16 0.78 0.66

CPU:total 4 (4 cores per cpu, 1 threads per core) family 6 model 7 stepping 10, cmov, cx8, fxsr, mmx, sse, sse2, sse3, ssse3

Memory: 4k page, physical 66112600k(62317276k free), swap 0k(0k free)

vm_info: Java HotSpot(TM) 64-Bit Server VM (10.0-b19) for linux-amd64 JRE (1.6.0_04-b12), built on Dec 14 2007 01:33:17 by "java_re" with gcc 3.2.2 (SuSE Linux)

time: Wed Jan  7 17:53:28 2009
elapsed time: 835 seconds
Comment 1 Johannes Schindelin 2009-01-07 18:41:49 CST
Could you please test again, after updating the JDK with "git submodule update java/linux-amd64"?
Comment 2 Johannes Schindelin 2009-01-07 20:00:18 CST
Ignacio came back with this report:

An unexpected exception occurred. 
Please mail me the following lines if you 
need help.
bene.schmid@gmail.com
   
java.lang.NullPointerException:Canvas3D: null GraphicsConfiguration
    at javax.media.j3d.Canvas3D.checkForValidGraphicsConfig(Canvas3D.java:963)
    at javax.media.j3d.Canvas3D.<init>(Canvas3D.java:1006)
    at ij3d.ImageCanvas3D.<init>(ImageCanvas3D.java:57)
    at ij3d.DefaultUniverse.<init>(DefaultUniverse.java:90)
    at ij3d.DefaultAnimatableUniverse.<init>(DefaultAnimatableUniverse.java:47)
    at ij3d.Image3DUniverse.<init>(Image3DUniverse.java:53)
    at ij3d.ImageJ3DViewer.run(ImageJ3DViewer.java:37)
    at ij.IJ.runUserPlugIn(IJ.java:173)
    at ij.IJ.runPlugIn(IJ.java:139)
    at ij.Executer.runCommand(Executer.java:127)
    at ij.Executer.run(Executer.java:75)
    at java.lang.Thread.run(Thread.java:619)
Comment 3 Johannes Schindelin 2009-01-12 21:33:38 CST
Seems to be an OpenGL 1.2 issue (we already require 1.3, it seems...) Bene?
Comment 4 Johannes Schindelin 2009-02-13 16:31:22 CST
Okay, I tried to fix the issue: http://pacific.mpi-cbg.de/cgi-bin/gitweb.cgi?p=VIB.git;a=commitdiff;h=9bd667c56e23bacd25787b767de6fb18b52d24b1

Awaiting feedback from Bene, the original author of the IFT plugin.
Comment 5 Johannes Schindelin 2009-02-13 16:36:43 CST
D'oh, ignore my last comment, it was for bug id 28.
Comment 6 Benjamin Schmid 2009-02-16 12:08:17 CST
Wasn't this bug fixed by Ignacio, in the end?
Comment 7 Johannes Schindelin 2009-02-16 12:16:33 CST
By upgrading the driver, yes.  I wonder if we can check for the (OpenGL) version early and error out in a user friendly way?
Comment 8 Johannes Schindelin 2009-04-20 17:56:42 CDT
Actually, Bene has added some good stuff, so this could be fixed.  Can you please check?
Comment 9 Johannes Schindelin 2009-07-09 19:32:04 CDT
Seems this was indeed a bug in the driver.