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Bug 376 - problem with simple neurite tracer and 3d viewer plugins
problem with simple neurite tracer and 3d viewer plugins
Status: RESOLVED WORKSFORME
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Linux
: P2 normal
Assigned To: Mark Longair
Depends on:
Blocks:
 
Reported: 2011-10-27 22:56 CDT by noa koffman
Modified: 2012-01-06 10:46 CST
0 users

See Also:
Description noa koffman 2011-10-27 22:56:43 CDT 
Hello, 
I'm currently using the simple neurite tracer and presenting the traces with the 3d viewer

I noticed that there is an option to change the original z-stack colors using fiji, however after doing so, the change cannot be seen in the 3d viewer.

From what I saw, there is no way to change the image color in the 3d viewer (not the traces but the original reconstructed figure)

Thank you for your help

Noa Koffman
Comment 1 Johannes Schindelin 2012-01-06 00:07:43 CST 
This seems like a feature request for me; hopefully Mark has enough time to take care of it (although I would strongly suggest to offer some benefit to him such as co-authorship).
Comment 2 Mark Longair 2012-01-06 10:46:20 CST 
Hi Noa,

You can change the colour of the original volume in the 3D viewer by selecting it in the 3D Viewer, and then using the viewer's Edit > Change color option.  I hope that's enough for your needs - I'm afraid I don't think it would be worth trying to do anything more sophisticated in Simple Neurite Tracer, so I'm closing this bug now.

Please re-open bug if that doesn't work for you.

regards,
mark