Hi,

I tried to stitch a 3x3 tile, where every tile has 20 z-planes (1 time point & 1 channel). Here is the output during the stitching:

Loading (0, 0): X:\Image_Data\Applications\Correlative_Microscopy\2012_07_12_LM_EM_Test_Acht\Installation_Acht_Day2\3x3_Tile3_OV=10_dz=1.0_tiles\tile_0001.tif ... 
1344x1024x20px, channels=1, timepoints=1 (2546 ms)
Loading (1, 0): X:\Image_Data\Applications\Correlative_Microscopy\2012_07_12_LM_EM_Test_Acht\Installation_Acht_Day2\3x3_Tile3_OV=10_dz=1.0_tiles\tile_0002.tif ... 
1344x1024x20px, channels=1, timepoints=1 (2024 ms)
Loading (2, 0): X:\Image_Data\Applications\Correlative_Microscopy\2012_07_12_LM_EM_Test_Acht\Installation_Acht_Day2\3x3_Tile3_OV=10_dz=1.0_tiles\tile_0003.tif ... 
1344x1024x20px, channels=1, timepoints=1 (2145 ms)
Loading (0, 1): X:\Image_Data\Applications\Correlative_Microscopy\2012_07_12_LM_EM_Test_Acht\Installation_Acht_Day2\3x3_Tile3_OV=10_dz=1.0_tiles\tile_0006.tif ... 
1344x1024x20px, channels=1, timepoints=1 (2260 ms)
Loading (1, 1): X:\Image_Data\Applications\Correlative_Microscopy\2012_07_12_LM_EM_Test_Acht\Installation_Acht_Day2\3x3_Tile3_OV=10_dz=1.0_tiles\tile_0005.tif ... 
1344x1024x20px, channels=1, timepoints=1 (2234 ms)
Loading (2, 1): X:\Image_Data\Applications\Correlative_Microscopy\2012_07_12_LM_EM_Test_Acht\Installation_Acht_Day2\3x3_Tile3_OV=10_dz=1.0_tiles\tile_0004.tif ... 
1344x1024x20px, channels=1, timepoints=1 (2254 ms)
Loading (0, 2): X:\Image_Data\Applications\Correlative_Microscopy\2012_07_12_LM_EM_Test_Acht\Installation_Acht_Day2\3x3_Tile3_OV=10_dz=1.0_tiles\tile_0007.tif ... 
1344x1024x20px, channels=1, timepoints=1 (2329 ms)
Loading (1, 2): X:\Image_Data\Applications\Correlative_Microscopy\2012_07_12_LM_EM_Test_Acht\Installation_Acht_Day2\3x3_Tile3_OV=10_dz=1.0_tiles\tile_0008.tif ... 
1344x1024x20px, channels=1, timepoints=1 (2098 ms)
Loading (2, 2): X:\Image_Data\Applications\Correlative_Microscopy\2012_07_12_LM_EM_Test_Acht\Installation_Acht_Day2\3x3_Tile3_OV=10_dz=1.0_tiles\tile_0009.tif ... 
1344x1024x20px, channels=1, timepoints=1 (2082 ms)
tile_0001.tif[1] <- tile_0002.tif[1]: (1209.0, -2.0, 0.0) correlation (R)=0.08631868 (3185 ms)
tile_0001.tif[1] <- tile_0006.tif[1]: (-4.0, 921.0, 0.0) correlation (R)=0.110719115 (3116 ms)
tile_0001.tif[1] <- tile_0005.tif[1]: (1209.0, 908.0, 0.0) correlation (R)=0.05985578 (289 ms)
tile_0002.tif[1] <- tile_0003.tif[1]: (1209.0, -7.0, 0.0) correlation (R)=0.11377019 (3113 ms)
tile_0002.tif[1] <- tile_0006.tif[1]: (-1217.0, 921.0, 0.0) correlation (R)=0.043606836 (282 ms)
tile_0002.tif[1] <- tile_0005.tif[1]: (-6.0, 921.0, 0.0) correlation (R)=0.10736094 (3122 ms)
tile_0002.tif[1] <- tile_0004.tif[1]: (1209.0, 908.0, 0.0) correlation (R)=0.07104469 (281 ms)
tile_0003.tif[1] <- tile_0005.tif[1]: (-1197.0, 921.0, 0.0) correlation (R)=0.06333363 (287 ms)
tile_0003.tif[1] <- tile_0004.tif[1]: (1.0, 921.0, 0.0) correlation (R)=0.10798501 (3097 ms)
tile_0006.tif[1] <- tile_0005.tif[1]: (1209.0, 8.0, 0.0) correlation (R)=0.12093078 (3158 ms)
tile_0006.tif[1] <- tile_0007.tif[1]: (6.0, 921.0, 0.0) correlation (R)=0.09469172 (3063 ms)
tile_0006.tif[1] <- tile_0008.tif[1]: (1209.0, 908.0, 0.0) correlation (R)=0.23019055 (304 ms)
tile_0005.tif[1] <- tile_0004.tif[1]: (1209.0, 12.0, 0.0) correlation (R)=0.088064305 (3071 ms)
tile_0005.tif[1] <- tile_0007.tif[1]: (-1209.0, 915.0, 0.0) correlation (R)=0.019135721 (277 ms)
tile_0005.tif[1] <- tile_0008.tif[1]: (-11.0, 921.0, 0.0) correlation (R)=0.076189354 (3062 ms)
tile_0005.tif[1] <- tile_0009.tif[1]: (1209.0, 915.0, 0.0) correlation (R)=0.05446936 (285 ms)
tile_0004.tif[1] <- tile_0008.tif[1]: (-1219.0, 921.0, 0.0) correlation (R)=0.036655083 (307 ms)
tile_0004.tif[1] <- tile_0009.tif[1]: (-11.0, 921.0, 0.0) correlation (R)=0.109483264 (3078 ms)
tile_0007.tif[1] <- tile_0008.tif[1]: (1209.0, 4.0, 0.0) correlation (R)=0.11832614 (3111 ms)
tile_0008.tif[1] <- tile_0009.tif[1]: (1209.0, 6.0, 0.0) correlation (R)=0.08482255 (3079 ms)
Error: No correlated tiles found, setting the first tile to (0, 0, 0).
 number of tiles = 1
Finished registration process (39572 ms).
tile_0001.tif: [1,3](0.0,0.0,0.0) 1.7976931348623157E308
Fuse & Display ...


And here is the error message, that pops up:

java.lang.reflect.InvocationTargetException
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at ij.Command.runPlugIn(Command.java:146)
	at ij.Command.runCommand(Command.java:95)
	at ij.Executer.run(Executer.java:64)
	at java.lang.Thread.run(Thread.java:662)
Caused by: java.lang.ArrayIndexOutOfBoundsException: 1
	at mpicbg.stitching.fusion.Fusion.estimateBounds(Fusion.java:592)
	at mpicbg.stitching.fusion.Fusion.estimateBounds(Fusion.java:528)
	at mpicbg.stitching.fusion.Fusion.fuse(Fusion.java:66)
	at plugin.Stitching_Grid.run(Stitching_Grid.java:527)
	at ij.IJ.runUserPlugIn(IJ.java:185)
	at ij.IJ.runPlugIn(IJ.java:152)
	... 8 more


Hope you can help me out...

System: Windows7 64bit, 8 GB RAM

Cheers,  Sebi