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Bug 451 - Problem at ROI Manager "add" function
Problem at ROI Manager "add" function
Status: RESOLVED FIXED
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Windows
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2012-07-17 13:25 CDT by Florian Schwarz
Modified: 2012-09-18 20:25 CDT
2 users (show)

See Also:

Description Florian Schwarz 2012-07-17 13:25:25 CDT
When I want to add a ROI (doesn't matter which kind) to the ROI Manager, it doesn't recognize the slice of the stack, the Roi is in. Instead it always saves the Roi at the not existing slice "0". (Just to be clear: "slice" is for me equivalent to "layer", "Z-axis of the Stack"...)
I just learned that it works with IJ.jar Version 1.45s but not with the actual version 1.46r.
If the problem isn't comprehensible, please tell me where to get an older version of Fiji. I couldn't find it on http://fiji.sc/wiki/index.php/Downloads.
Thank you!

Desperatly looking forward to your answer,

Florian Schwarz
Max-Planck-Institut for Neurobiology Martinsried
 

Information about your version of Java - this information is useful for the Fiji developers:

  os.arch => x86
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) Client VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: Up-to-date

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: C:\PROGRA~1\Fiji.app/java/win32/jdk1.6.0_24/jre/
  ij.dir => C:\PROGRA~1\Fiji.app

Information about the version of each plugin:

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Comment 1 Wayne Rasband 2012-07-19 05:46:01 CDT
This bug is fixed in ImageJ 1.47a but, in addition to upgrading, you may also need to enable "Associate 'Show All' ROIs with stack positions" in the ROI Manager's  More>>Options dialog box.

-wayne
Comment 2 Johannes Schindelin 2012-09-18 20:25:11 CDT
Since we are now well beyond 1.47a, the bug should be officially closed now.