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Bug 478 - Can't open .nd2 files
Can't open .nd2 files
Status: RESOLVED FIXED
Product: Fiji
Classification: Unclassified
Component: Bio-Formats
unspecified
Macintosh Mac OS
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2012-08-31 01:44 CDT by audrey.oneill
Modified: 2013-06-11 14:24 CDT
3 users (show)

See Also:
Description audrey.oneill 2012-08-31 01:44:03 CDT 
java.lang.reflect.InvocationTargetException
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:597)
        at ij.Command.runPlugIn(Command.java:146)
        at ij.Command.runCommand(Command.java:95)
        at ij.Executer.run(Executer.java:64)
        at java.lang.Thread.run(Thread.java:680)
Caused by: java.lang.NoSuchMethodError:
loci.formats.IFormatReader.addStatusListener(Lloci/formats/StatusListener;)V
        at loci.plugins.importer.Importer.run(Importer.java:229)
        at loci.plugins.LociImporter.run(LociImporter.java:77)
        at ij.IJ.runUserPlugIn(IJ.java:185)
        at ij.IJ.runPlugIn(IJ.java:152)
        at ij.IJ.runPlugIn(IJ.java:141)
        at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:229)
        at HandleExtraFileTypes.run(HandleExtraFileTypes.java:37)
        at ij.IJ.runUserPlugIn(IJ.java:185)
        at ij.IJ.runPlugIn(IJ.java:152)
        at ij.IJ.runPlugIn(IJ.java:141)
        at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:413)
        at ij.io.Opener.openImage(Opener.java:288)
        at ij.io.Opener.openImage(Opener.java:309)
        at ij.io.Opener.open(Opener.java:138)
        at ij.io.Opener.open(Opener.java:66)
        at ij.plugin.Commands.run(Commands.java:23)
        at ij.IJ.runPlugIn(IJ.java:158)
        ... 8 more

Information about your version of Java - this information is useful for the Fiji developers:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.7.4
  java.version => 1.6.0_33
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_33-b03-424-11M3720
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.8-b03-424
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: UP_TO_DATE

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
  ij.dir => /Applications/Fiji.app

Information about the version of each plugin:

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Comment 1 Curtis Rueden 2013-06-11 14:15:31 CDT 
Hi Audrey,

Are you still having this problem with the most recent, fully updated version of Fiji (Help > Update Fiji returns "Your Fiji is up to date!")?

Thanks,
Curtis
Comment 2 Curtis Rueden 2013-06-11 14:24:17 CDT 
Audrey's reply: "Nope, I am good now - thanks!"
Closing this bug!