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Bug 506 - Fiji updater does not start on Mac, 64bit
Fiji updater does not start on Mac, 64bit
Status: RESOLVED FIXED
Product: Fiji
Classification: Unclassified
Component: Other
unspecified
Macintosh Mac OS
: P5 enhancement
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2012-10-02 20:34 CDT by Ignacio Arganda
Modified: 2012-10-03 01:24 CDT
1 user (show)

See Also:
Description Ignacio Arganda 2012-10-02 20:34:38 CDT 
I got this error while trying to run the Fiji updater on my Mac:

java.lang.NoClassDefFoundError: imagej/command/Command
	at java.lang.ClassLoader.defineClass1(Native Method)
	at java.lang.ClassLoader.defineClassCond(ClassLoader.java:631)
	at java.lang.ClassLoader.defineClass(ClassLoader.java:615)
	at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
	at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
	at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
	at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
	at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:225)
	at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:217)
	at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:212)
	at java.lang.ClassLoader.defineClass1(Native Method)
	at java.lang.ClassLoader.defineClassCond(ClassLoader.java:631)
	at java.lang.ClassLoader.defineClass(ClassLoader.java:615)
	at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
	at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
	at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
	at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
	at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:225)
	at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:217)
	at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:212)
	at java.lang.ClassLoader.defineClass1(Native Method)
	at java.lang.ClassLoader.defineClassCond(ClassLoader.java:631)
	at java.lang.ClassLoader.defineClass(ClassLoader.java:615)
	at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
	at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
	at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
	at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
	at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:225)
	at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:217)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:295)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
	at fiji.updater.Adapter.loadClass(Adapter.java:568)
	at fiji.updater.Adapter.runUpdater(Adapter.java:150)
	at fiji.updater.Updater.run(Updater.java:17)
	at ij.IJ.runUserPlugIn(IJ.java:185)
	at ij.IJ.runPlugIn(IJ.java:152)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at ij.Command.runPlugIn(Command.java:146)
	at ij.Command.runCommand(Command.java:95)
	at ij.Executer.run(Executer.java:64)
	at java.lang.Thread.run(Thread.java:680)
Caused by: java.lang.ClassNotFoundException: imagej.command.Command
	at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
	at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:266)
	at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:217)
	at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:212)
	... 53 more


Information about your version of Java - this information is useful for the Fiji developers:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.6.8
  java.version => 1.6.0_35
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_35-b10-428-10M3811
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.10-b01-428
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: CHECK_TURNED_OFF

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
  ij.dir => /Applications/Fiji.app

Information about the version of each plugin:

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Comment 1 Johannes Schindelin 2012-10-02 21:27:27 CDT 
Can you please remove the ij-core, ij-updater-core and ij-ui-swing-updater .jar files from Fiji.app/jars/ and try again? It seems you have been unlucky to update to a bad version of the Fiji Updater, deleting the files should get it kick-started again.

Sorry for the trouble.
Comment 2 Johannes Schindelin 2012-10-03 01:24:43 CDT 
Ignacio reported privately that this fixed it.