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Bug 600 - Newest .lif file from Leica SP8 not reporting z voxel size upon import.
Newest .lif file from Leica SP8 not reporting z voxel size upon import.
Status: RESOLVED MOVED
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Windows
: P5 enhancement
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2013-05-02 07:13 CDT by Mark
Modified: 2013-05-06 09:49 CDT
2 users (show)

See Also:

Attachments
Example .lif file from the newest Leica Confocal (193 bytes, text/plain)
2013-05-02 07:13 CDT, Mark

Description Mark 2013-05-02 07:13:38 CDT 
Created attachment 102
Example .lif file from the newest Leica Confocal

This bug was reported once (#599) and was asked to upload a sample image using the Help - Upload sample image, but that command gave the following error so I uploaded the example file below.

(Fiji Is Just) ImageJ 1.47p; Java 1.6.0_24 [64-bit]; Windows NT (unknown) 6.2; 15MB of 4579MB (<1%)
 
java.lang.NoClassDefFoundError: fiji/IJ1StatusService
	at fiji.util.Fiji_Uploader.run(Fiji_Uploader.java:26)
	at ij.IJ.runUserPlugIn(IJ.java:194)
	at ij.IJ.runPlugIn(IJ.java:160)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at ij.Command.runPlugIn(Command.java:148)
	at ij.Command.runCommand(Command.java:97)
	at ij.Executer.run(Executer.java:64)
	at java.lang.Thread.run(Thread.java:662)
Comment 1 Curtis Rueden 2013-05-03 13:45:35 CDT 
I am afraid the attachment is a 193-byte text file, not a LIF file. Can you please visit the Fiji Bugzilla (http://fiji.sc/bugzilla/﷒0﷓) and try to attach the file that way?

Alternately, if you have a DropBox account you could share a link that way. Or if the LIF is less than 20 MB you could attach it to a private email.
Comment 2 Curtis Rueden 2013-05-03 13:46:25 CDT 
Forgot to mention: one other option for sending the file is to use the OMERO.qa system: http://qa.openmicroscopy.org.uk/qa/upload/
Comment 3 Melissa Linkert 2013-05-06 09:49:56 CDT 
See: https://trac.openmicroscopy.org.uk/ome/ticket/10843