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Bug 727 - in Fiji build from current master scifio's ImgOpener cannot be instantiated
in Fiji build from current master scifio's ImgOpener cannot be instantiated
Status: RESOLVED WONTFIX
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
Macintosh Mac OS
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2014-04-10 13:20 CDT by Tobias Pietzsch
Modified: 2014-04-29 11:06 CDT
2 users (show)

See Also:
Description Tobias Pietzsch 2014-04-10 13:20:06 CDT 
I cloned fiji from master and and ./Build.sh, this is the most recent commit: 46ed778184022a06ef9c843199daeeebaf252326

When I start Fiji, open the BeanShell interpreter and do
new io.scif.img.ImgOpener() I get the following exception

>>> new io.scif.img.ImgOpener()
Sourced file: inline evaluation of: ``new io.scif.img.ImgOpener();'' : Object constructor : at Line: 1 : in file: inline evaluation of: ``new io.scif.img.ImgOpener();'' : new io .scif .img .ImgOpener ( ) 

Target exception: java.lang.IllegalArgumentException: Invalid service: io.scif.services.JAIIIOServiceImpl

	at bsh.BSHAllocationExpression.constructObject(Unknown Source)
	at bsh.BSHAllocationExpression.objectAllocation(Unknown Source)
	at bsh.BSHAllocationExpression.eval(Unknown Source)
	at bsh.BSHPrimaryExpression.eval(Unknown Source)
	at bsh.BSHPrimaryExpression.eval(Unknown Source)
	at bsh.Interpreter.eval(Unknown Source)
	at bsh.Interpreter.eval(Unknown Source)
	at bsh.Interpreter.eval(Unknown Source)
	at BSH.BSH_Interpreter.eval(BSH_Interpreter.java:56)
	at common.AbstractInterpreter.execute(AbstractInterpreter.java:659)
	at common.AbstractInterpreter$ExecuteCode.run(AbstractInterpreter.java:559)

To investigate, I created a maven project with pom-scijava version 1.155 as parent (same parent as fiji's pom.xml). In this project I can do new io.scif.img.ImgOpener() and it works. I'm puzzled as to what might be different in fiji to cause the error.

Information about your version of Java:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.8.5
  java.version => 1.6.0_65
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_65-b14-462-11M4609
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.65-b04-462
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: CHECK_TURNED_OFF

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: /Library/Java/JavaVirtualMachines/jdk1.7.0_51.jdk/Contents/Home
  ij.dir => /Users/pietzsch/workspace/fiji

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  770cd66f 20140410161200 plugins/Fiji_Plugins-2.0.0-SNAPSHOT.jar
  c3b201be 20140410161200 plugins/Fiji_Updater.jar
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  68f628d0 20140410161200 plugins/Helmholtz_Analysis-2.0.1-SNAPSHOT.jar
  216f3328 20140410161200 plugins/IJ_Robot-1.0.0.jar
  b9eaf3c1 20140410161200 plugins/IO_-2.0.0-SNAPSHOT.jar
  e6b88239 20140410161200 plugins/Image_5D-1.2.5.jar
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  ab65885f 20140410161200 plugins/IsoData_Classifier-2.0.0-SNAPSHOT.jar
  28582f55 20140410161128 plugins/JRuby/imagej.rb
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  56aa64ad 20140410161200 plugins/Javascript_-2.0.0-SNAPSHOT.jar
  49e52e60 20140410161200 plugins/Jython_Interpreter-2.0.0-SNAPSHOT.jar
  334a8495 20140410161200 plugins/Kuwahara_Filter-2.0.0-SNAPSHOT.jar
  18dc623e 20140410161200 plugins/Lasso_and_Blow_Tool-2.0.0-SNAPSHOT.jar
  70abae01 20140410161200 plugins/Linear_Kuwahara-2.0.0-SNAPSHOT.jar
  2353c165 20140410161200 plugins/LocalThickness_-3.1.1-SNAPSHOT.jar
  6c047c84 20140410161200 plugins/MTrack2_-2.0.0-SNAPSHOT.jar
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  284ccb3e 20140410161200 plugins/M_I_P-2.0.0-SNAPSHOT.jar
  65a2dd78 20140410161128 plugins/Macros/About_Plugin_Macros.txt
  dff5642d 20140410161128 plugins/Macros/Bulls_Eye.txt
  e7ffe8ba 20140410161128 plugins/Macros/Polygon_.txt
  39f7ffcd 20140410161128 plugins/Macros/RGB_Histogram.txt
  3ee0edfa 20140410161128 plugins/Macros/batch_convert_any_to_tif.txt
  9acd6b27 20140410161200 plugins/Manual_Tracking-2.0.0-SNAPSHOT.jar
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  578994ca 20140410161128 plugins/Scripts/File/Make_Screencast.bsh
  c70b2e6f 20140410161128 plugins/Scripts/File/Open_Samples/Adelsons_Squares.ijm
  60df5674 20140410161128 plugins/Scripts/File/Open_Samples/Spirals_.ijm
  a3edd6db 20140410161128 plugins/Scripts/Image/Adjust/Scale_to_DPI.js
  209aed52 20140410161128 plugins/Scripts/Image/Color/Set_Color_By_Wavelength.ijm
  1de6c712 20140410161128 plugins/Scripts/Image/Hyperstacks/Temporal-Color_Code.ijm
  af064f17 20140410161128 plugins/Scripts/Plugins/Registration/Correct_3D_drift.py
  a6e496fc 20140410161128 plugins/Scripts/Plugins/Utilities/Create_Desktop_Icon.bsh
  b5ee58a2 20140410161128 plugins/Scripts/Plugins/Utilities/Find_Jar_For_Class.bsh
  57d68832 20140410161128 plugins/Scripts/Plugins/Utilities/Fix_Updater.js
  fc46bd40 20140410161128 plugins/Scripts/Plugins/Utilities/Record_Desktop.py
  9d4d012a 20140410161128 plugins/Scripts/Plugins/Utilities/Record_Window.py
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  34b7341d 20140410161128 retro/backport-util-concurrent-3.1.jar
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  ff34d026 20140410161128 scripts/Matlab3DViewerDemo_1.m
  25be149f 20140410161128 scripts/Matlab3DViewerDemo_2.m
  cb529b6c 20140410161128 scripts/Matlab3DViewerDemo_3.m
  53d2da73 20140410161128 scripts/Matlab3DViewerIntroduction.m
  4bb342fa 20140410161128 scripts/Miji.m
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  d7e9eb5f 20140410161128 scripts/copytoImg.m
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  d42c4c16 20140410161128 scripts/copytoMatlab.m
Comment 1 Johannes Schindelin 2014-04-29 11:06:20 CDT 
For the record, I just tried the same in a fully up-to-date *user* installation. It works. And since I care most about that use case when it comes to the script editor (as opposed to developer installations; developers are always expected to be more knowledgeable than users, and they can always resort to using Java in Eclipse instead of Beanshell in a script editor), I am closing this as WONTFIX.

If you have the need to fix this particular use case, I am of course willing to assist, but please understand that I have many more pressing issues to tackle, therefore will be unable to fix this particular problem.