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Bug 737 - xy coordinates of ROIs do not match with image anymore
xy coordinates of ROIs do not match with image anymore
Status: RESOLVED WORKSFORME
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Windows
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2014-04-30 09:59 CDT by rdetert
Modified: 2014-05-01 12:07 CDT
3 users (show)

See Also:
Description rdetert 2014-04-30 09:59:42 CDT 
Dear Sir/Madam,

I want to reload ROIs from the past. But the xy coordinates do not match with the image anymore. The ROIs (lines in my case) are no longer on a cell. How can I fix this problem?
I have saved the ROI as "image_name_Roi" to make sure that the right combination of ROI and image will be made. The ROI is saved as .zip file.

Information about your version of Java:

  os.arch => x86
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) Client VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: C:\PROGRA~1\Fiji\Fiji.app/java/win32/jdk1.6.0_24//jre
  ij.dir => C:\PROGRA~1\Fiji\Fiji.app

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Comment 1 Wayne Rasband 2014-04-30 11:51:30 CDT 
I am unable to duplicate this problem. Using ImageJ 1.46h, I opened an image, created some straight line selections, added them to the ROI Manager, and saved them as a .zip ROI set. I then opened the same image in ImageJ 1.49a, opened the ROI set, and the lines were at the same locations.
Comment 2 Curtis Rueden 2014-05-01 12:07:21 CDT 
I am unable to duplicate this problem with Fiji between ImageJ versions 1.48v and 1.46r.

In ImageJ 1.46r, I created a ROI set on Blobs by doing a default threshold, adding it to the ROI manager, splitting it, and saving the result to a ZIP. I did the same in ImageJ 1.48v to a second ROI set. I tested both ROI sets in both versions of ImageJ and they appear identical. They also produce identical measurement results using the ROI Manager's Measure button.

Could you please isolate for exactly which two versions of ImageJ you see the skew? You can use Help > Update ImageJ to switch between ImageJ versions. If you can demonstrate that your particular ROI set loads differently across different versions of ImageJ, please reopen this issue and we can investigate the problem further.