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Bug 870 - Can't save image as OME Tiff
Can't save image as OME Tiff
Status: RESOLVED MOVED
Product: ImageJ
Classification: Unclassified
Component: SCIFIO
unspecified
PC Linux
: P5 enhancement
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2014-07-29 02:14 CDT by marelo64
Modified: 2015-04-06 15:49 CDT
3 users (show)

See Also:
Description marelo64 2014-07-29 02:14:08 CDT 
I am not sure that it's the correct behaviour but my guess will be that the new SCIFIO integration in IJ2 will allow to open BF files with File > Open (or drag and drop) AND ALSO File > Save will just do the opposite, detecting the correct format to write on hard drive.

But when I open an OME Tiff (could be any other type of file I guess) then File > Save (with .ome.tif as a suffix) only write a "classic" IJ Tiff file which has been confirmed with tiffcomment command (no OME XML in output). Note that Plugins > BF > BF exporter works fine.

Is that the correct behaviour guys ?

Thank you,
Comment 1 Mark Hiner 2014-07-29 07:25:38 CDT 
For the current code, this is the correct behavior. Our focus for the initial release was getting the opening pipeline working.

I opened an issue for adding saving functionality: https://github.com/imagej/imagej-legacy/issues/70


In the mean time, you can use "File > Export > Image..." to write with the SCIFIO writers, which will get the OME-XML writer.
Comment 2 marelo64 2014-07-29 07:27:43 CDT 
Good to know. Thank you Mark.
Comment 3 Curtis Rueden 2014-07-29 09:39:20 CDT 
Moved to GitHub: https://github.com/imagej/imagej-legacy/issues/70