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Bug 894 - Histogram command lost ability to be applied to stack
Histogram command lost ability to be applied to stack
Status: RESOLVED FIXED
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Linux
: P4 normal
Assigned To: Wayne Rasband
Depends on:
Blocks:
 
Reported: 2014-08-11 04:55 CDT by Vassilis Kehayas
Modified: 2015-04-06 21:58 CDT
3 users (show)

See Also:
Description Vassilis Kehayas 2014-08-11 04:55:49 CDT 
Contrary to previous versions, where when you run the command histogram you would be asked whether to apply it on a stack or not, my current version does not present this option anymore.
You can confirm that the process is not appied on the whole stack but rather on the given slice of the stack that is on the foreground by changing between two different slices.

Information about your version of Java:

  os.arch => amd64
  os.name => Linux
  os.version => 3.13.0-32-generic
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.X11GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => gnome
  file.separator => /

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: /home/vassilis/Apps/Fiji.app/java/linux-amd64/jdk1.6.0_24//jre
  imagej.dir => /home/vassilis/Apps/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20140810142118)
Fiji: http://fiji.sc/update/ (last check:20140808200226)

Files not up-to-date:
  b0398adb (LOCAL_ONLY) 20140212174320 plugins/DeconvolutionLab/DeconvolutionLab_.jar
Comment 1 Curtis Rueden 2015-04-06 14:56:53 CDT 
It looks like the Analyze > Histogram command has not had that prompt for quite some time: when running Analyze > Histogram on the Mitosis sample, ImageJ 1.44p has the prompt, but ImageJ 1.45s does not.

Wayne: Would you consider this a regression that should be fixed? Or should we close this issue as WONTFIX?
Comment 2 Wayne Rasband 2015-04-06 21:58:11 CDT 
The latest ImageJ daily build (1.49r12) fixes this v1.45 regression that caused the Histogram command to lose its ability to be applied to composite color stacks.