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Bug 936 - Defective opening of a 32bit hyperstack
Defective opening of a 32bit hyperstack
Status: NEW
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Windows
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2014-10-01 17:10 CDT by baptiste.roelens
Modified: 2014-10-01 17:10 CDT
1 user (show)

See Also:
Description baptiste.roelens 2014-10-01 17:10:09 CDT 
A 32bit hyperstack was generated by "Images to stacks" and then "stacks to hyperstacks" and then saved as Tiff. Upon re-opening of the saved file, all the pixel with a non-zero value have now a much lower value (as an example, one pixel that had a value of 3829.771 in the original file had now a value of 5.3656E-42). This does not happen upon opening the file with ImageJ 1.48v.

Information about your version of Java:

  os.arch => amd64
  os.name => Windows NT (unknown)
  os.version => 6.2
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: C:\Fiji.app/java/win64/jdk1.6.0_24//jre
  imagej.dir => C:\Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20140910152552)
Fiji: http://fiji.sc/update/ (last check:20140911074641)

Files not up-to-date:
  c8af6461 (MODIFIED) 20141001110033 jars/imagej-updater-0.6.2.jar
  41b5e0e9 (MODIFIED) 20141001110033 jars/scifio-0.16.3.jar
  82ac1b1c (LOCAL_ONLY) 20140904182315 plugins/MosaicJ.jar