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is an ImageJ plugin for morphological data mining, three-dimensional modeling and image stitching, registration, editing and annotation.
uses Java3D to display surfaces, orthogonal slices and to perform volume rendering.
Simple Neurite Tracer
allows you to segment linear structures in 3D images by marking both ends in 3D and letting the tracer work out the rest.
plugin makes it a breeze to stitch multiple overlapping recordings of a single specimen into a single 3D image.
plugins provide fully automatic detection of SIFT or MOPS features and registration using corresponding features of two images.
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plugin can display 3D stacks via volume rendering, isosurfaces or as orthoslices.
plugin can be used to annotate images non-destructively.
plugin offers a range of manual and semi-automatic segmentation tools.
plugin provides semi-automatic segmentation of color images via Simple Interactive Object Extraction.
plugin provides fast, reliable and high-precision registration and fusion of Selective Plane Illumination Microscopy data as well as other 3d multi-angle image acquisitions.
plugin provides the means to
reconstruct neuronal arbors in 3D
relationships between trees
to represent synapses.
provides the means to manually reconstruct neurons and synapses with
objects that relate them.
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