Antonios-MacBook-Pro:~ antoniosechi$ cd /Applications/Fiji.app/Contents/MacOS/ Antonios-MacBook-Pro:MacOS antoniosechi$ cp fiji-macosx debug cp: fiji-macosx: No such file or directory Antonios-MacBook-Pro:MacOS antoniosechi$ ./debug sysctl says os_release is 13.4.0 Detected ImageJ2 Available RAM: 5759MB, using 3/4 of that: 4320MB JRE not found in '/Applications/Fiji.app/jre' Ignoring Apple Framework java executable: '/System/Library/Frameworks/JavaVM.framework/Versions/A/Commands/java' No JRE was found in default locations Re-executing with correct library lookup path (/Applications/Fiji.app/lib/macosx:/Applications/Fiji.app/mm/macosx) sysctl says os_release is 13.4.0 Detected ImageJ2 Available RAM: 5759MB, using 3/4 of that: 4320MB JRE not found in '/Applications/Fiji.app/jre' Ignoring Apple Framework java executable: '/System/Library/Frameworks/JavaVM.framework/Versions/A/Commands/java' No JRE was found in default locations java -Djava.ext.dirs=/Applications/Fiji.app/java/macosx-java3d/Home/lib/ext/Library/Java/Extensions:/System/Library/Java/Extensions:/System/Library/Frameworks/JavaVM.framework/Home/lib/ext -Dpython.cachedir.skip=true -Dplugins.dir=/Applications/Fiji.app -Xmx4320m -Xincgc -XX:PermSize=128m -Djava.class.path=/Applications/Fiji.app/jars/imagej-launcher-3.1.6.jar -Dimagej.dir=/Applications/Fiji.app -Dij.dir=/Applications/Fiji.app -Dfiji.dir=/Applications/Fiji.app -Dfiji.defaultLibPath=lib/server/libjvm.dylib -Dfiji.executable=./debug -Dij.executable=./debug -Djava.library.path=/Applications/Fiji.app/lib/macosx:/Applications/Fiji.app/mm/macosx -Dij.debug=true -Dscijava.log.level=debug net.imagej.launcher.ClassLauncher -ijjarpath jars -ijjarpath plugins net.imagej.Main JavaVMBundlerVersionsDirURL: /System/Library/Frameworks/JavaVM.framework/Versions TargetJavaVM: /System/Library/Frameworks/JavaVM.framework/Versions/1.6 Setting JAVA_JVM_VERSION to 1.6 Sep 28 13:51:46 Antonios-MacBook-Pro.local debug[391] : The function `CGContextErase' is obsolete and will be removed in an upcoming update. Unfortunately, this application, or a library it uses, is using this obsolete function, and is thereby contributing to an overall degradation of system performance. ij1.plugin.dirs: null $HOME/.plugins: /Users/antoniosechi/.plugins does not exist Launching main class net.imagej.Main with parameters [] Class loader = sun.misc.Launcher$AppClassLoader@1feed786 Checking class loader: sun.misc.Launcher$AppClassLoader@1feed786 Checking URL: file:/Applications/Fiji.app/jars/imagej-launcher-3.1.6.jar Not Eclipse because first entry is: file:/Applications/Fiji.app/jars/imagej-launcher-3.1.6.jar [DEBUG] Creating service: org.scijava.event.DefaultEventService [DEBUG] Creating service: org.scijava.log.StderrLogService [DEBUG] Created service 'org.scijava.log.StderrLogService' in 1 ms [DEBUG] Creating service: org.scijava.thread.DefaultThreadService [DEBUG] Created service 'org.scijava.thread.DefaultThreadService' in 0 ms [DEBUG] Created service 'org.scijava.event.DefaultEventService' in 25 ms [DEBUG] Creating service: net.imagej.lut.DefaultLUTService [DEBUG] Creating service: org.scijava.module.DefaultModuleService [DEBUG] Creating service: org.scijava.plugin.DefaultPluginService [INFO] Found 772 plugins. [DEBUG] - class='org.scijava.module.process.DebugPreprocessor', priority=Infinity, enabled=true, pluginType=PreprocessorPlugin [DEBUG] - class='org.scijava.module.process.DebugPostprocessor', priority=Infinity, enabled=true, pluginType=PostprocessorPlugin [DEBUG] - class='net.imagej.plugins.tools.KonamiHandler', name='Konami', priority=Infinity, enabled=true, pluginType=Tool [DEBUG] - class='org.scijava.event.DefaultEventService', priority=100000.0, enabled=true, pluginType=Service [DEBUG] - class='org.scijava.module.process.ValidityPreprocessor', priority=10001.0, enabled=true, pluginType=PreprocessorPlugin [DEBUG] - class='net.imagej.display.ActiveImagePreprocessor', priority=10000.0, enabled=true, pluginType=PreprocessorPlugin [DEBUG] - class='net.imagej.legacy.plugin.ActiveImagePlusPreprocessor', priority=10000.0, enabled=true, pluginType=PreprocessorPlugin [DEBUG] - class='org.scijava.ui.UIPreprocessor', priority=10000.0, enabled=true, pluginType=PreprocessorPlugin [DEBUG] - class='org.scijava.display.ActiveDisplayPreprocessor', priority=10000.0, enabled=true, pluginType=PreprocessorPlugin [DEBUG] - class='org.scijava.module.process.GatewayPreprocessor', priority=10000.0, enabled=true, pluginType=PreprocessorPlugin [DEBUG] - class='org.scijava.module.process.ServicePreprocessor', priority=10000.0, enabled=true, pluginType=PreprocessorPlugin [DEBUG] - class='io.scif.bf.BioFormatsFormat', name='Bio-Formats Compatibility Format', priority=10000.0, enabled=true, pluginType=Format [DEBUG] - class='net.imagej.ops.slicer.SlicewiseRAI2RAI', name='slicemapper', priority=10000.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.arithmetic.add.parallel.AddConstantToArrayDoubleImageP', name='add', priority=111.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.arithmetic.add.parallel.AddConstantToArrayByteImageP', name='add', priority=110.0, enabled=true, pluginType=Op [DEBUG] - class='io.scif.bf.ome.BioFormatsTranslator$BioFormatsOMETranslator', priority=101.0, enabled=true, pluginType=ToOMETranslator [DEBUG] - class='io.scif.ome.translators.OMETIFFTranslator$OMEtoOMETIFFTranslator', priority=101.0, enabled=true, pluginType=ToOMETranslator [DEBUG] - class='io.scif.ome.translators.OMETIFFTranslator$OMETIFFtoOMETranslator', priority=101.0, enabled=true, pluginType=FromOMETranslator [DEBUG] - class='net.imagej.app.ToplevelImageJApp', name='ImageJ', priority=101.0, enabled=true, pluginType=App [DEBUG] - class='net.imagej.ops.arithmetic.add.AddConstantToArrayDoubleImage', name='add', priority=101.0, enabled=true, pluginType=Op [DEBUG] - class='org.scijava.ui.awt.widget.AWTMessageWidget', priority=100.0, enabled=true, pluginType=InputWidget [DEBUG] - class='org.scijava.ui.swing.widget.SwingMessageWidget', priority=100.0, enabled=true, pluginType=InputWidget [DEBUG] - class='net.imagej.lut.DefaultLUTService', priority=100.0, enabled=true, pluginType=Service [DEBUG] - class='net.imagej.legacy.display.LegacyImageDisplayViewer', priority=100.0, enabled=true, pluginType=DisplayViewer [DEBUG] - class='net.imagej.legacy.display.LegacyTextDisplayViewer', priority=100.0, enabled=true, pluginType=DisplayViewer [DEBUG] - class='org.scijava.module.process.InitPreprocessor', priority=100.0, enabled=true, pluginType=PreprocessorPlugin [DEBUG] - class='org.scijava.script.DefaultScriptService', priority=100.0, enabled=true, pluginType=Service [DEBUG] - class='net.imagej.ui.swing.overlay.ThresholdJHotDrawAdapter', priority=100.0, enabled=true, pluginType=JHotDrawAdapter [DEBUG] - class='net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter', priority=100.0, enabled=true, pluginType=JHotDrawAdapter [DEBUG] - class='io.scif.ome.translators.BMPTranslator$BMPOMETranslator', priority=100.0, enabled=true, pluginType=ToOMETranslator [DEBUG] - class='io.scif.ome.translators.MicromanagerTranslator$MicromanagerOMETranslator', priority=100.0, enabled=true, pluginType=FromOMETranslator [DEBUG] - class='io.scif.ome.translators.OBFTranslator$OBFOMETranslator', priority=100.0, enabled=true, pluginType=ToOMETranslator [DEBUG] - class='io.scif.ome.translators.TIFFTranslator$TIFFOMETranslator', priority=100.0, enabled=true, pluginType=ToOMETranslator [DEBUG] - class='io.scif.ome.translators.TIFFTranslator$OMETIFFTranslator', priority=100.0, enabled=true, pluginType=FromOMETranslator [DEBUG] - class='io.scif.ome.translators.APNGTranslator$OMEAPNGTranslator', priority=100.0, enabled=true, pluginType=FromOMETranslator [DEBUG] - class='io.scif.ome.translators.APNGTranslator$APNGOMETranslator', priority=100.0, enabled=true, pluginType=ToOMETranslator [DEBUG] - class='io.scif.ome.translators.ICSTranslator$OMEICSTranslator', priority=100.0, enabled=true, pluginType=FromOMETranslator [DEBUG] - class='io.scif.ome.translators.ICSTranslator$ICSOMETranslator', priority=100.0, enabled=true, pluginType=ToOMETranslator [DEBUG] - class='io.scif.ome.translators.DICOMTranslator$DICOMOMETranslator', priority=100.0, enabled=true, pluginType=ToOMETranslator [DEBUG] - class='io.scif.ome.translators.NRRDTranslator$NRRDOMETranslator', priority=100.0, enabled=true, pluginType=ToOMETranslator [DEBUG] - class='io.scif.ome.translators.EPSTranslator$OMEEPSTranslator', priority=100.0, enabled=true, pluginType=FromOMETranslator [DEBUG] - class='net.imagej.operator.OpAdd', name='Add', priority=100.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.app.ImageJApp', name='ImageJ', priority=100.0, enabled=true, pluginType=App [DEBUG] - class='net.imagej.ui.swing.tools.SwingRectangleTool', name='Rectangle', description='Rectangular overlays', iconPath='/icons/tools/rectangle.png', priority=100.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.ops.arithmetic.add.AddConstantToArrayByteImage', name='add', priority=100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.onthefly.ArithmeticOp$AddOp', name='add', priority=100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.onthefly.ArithmeticOp$DivideOp', name='divide', priority=100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.legacy.ui.LegacyUI', name='legacy', priority=100.0, enabled=true, pluginType=UserInterface [DEBUG] - class='net.imagej.ops.onthefly.ArithmeticOp$MultiplyOp', name='multiply', priority=100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.onthefly.ArithmeticOp$SubtractOp', name='subtract', priority=100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter', priority=99.0, enabled=true, pluginType=JHotDrawAdapter [DEBUG] - class='net.imagej.ui.swing.tools.SwingEllipseTool', name='Oval', description='Oval selections', iconPath='/icons/tools/oval.png', priority=99.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.operator.OpSubtract', name='Subtract', priority=99.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter', priority=98.5, enabled=true, pluginType=JHotDrawAdapter [DEBUG] - class='net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter', priority=98.0, enabled=true, pluginType=JHotDrawAdapter [DEBUG] - class='net.imagej.operator.OpMultiply', name='Multiply', priority=98.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.ui.swing.tools.SwingPolygonTool', name='Polygon', description='Polygon overlays', iconPath='/icons/tools/polygon.png', priority=98.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.ui.swing.overlay.LineJHotDrawAdapter', priority=97.0, enabled=true, pluginType=JHotDrawAdapter [DEBUG] - class='net.imagej.operator.OpDivide', name='Divide', priority=97.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.ui.swing.tools.SwingLineTool', name='Line', description='Straight line overlays', iconPath='/icons/tools/line.png', priority=97.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter', priority=96.0, enabled=true, pluginType=JHotDrawAdapter [DEBUG] - class='net.imagej.operator.OpAnd', name='AND', priority=96.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.ui.swing.tools.SwingPolylineTool', name='Polyline', description='Polyline overlays', iconPath='/icons/tools/polyline.png', priority=96.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.ui.swing.overlay.AngleJHotDrawAdapter', priority=95.0, enabled=true, pluginType=JHotDrawAdapter [DEBUG] - class='net.imagej.ui.swing.tools.SwingAngleTool', name='Angle', description='Angle overlays', iconPath='/icons/tools/angle.png', priority=95.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.operator.OpOr', name='OR', priority=95.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.ui.swing.overlay.PointJHotDrawOverlay', priority=94.0, enabled=true, pluginType=JHotDrawAdapter [DEBUG] - class='net.imagej.ui.swing.tools.SwingPointTool', name='Point', description='Point overlays', iconPath='/icons/tools/point.png', priority=94.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.operator.OpXor', name='XOR', priority=94.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.operator.OpMin', name='Min', priority=93.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.operator.OpMax', name='Max', priority=92.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.operator.OpAverage', name='Average', priority=91.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.operator.OpDifference', name='Difference', priority=90.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.operator.OpCopy', name='Copy', priority=89.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.operator.OpTransparentZero', name='Transparent-zero', priority=88.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='fiji.plugin.trackmate.tracking.oldlap.FastLAPTrackerFactory', priority=10.0, enabled=true, pluginType=SpotTrackerFactory [DEBUG] - class='fiji.plugin.trackmate.tracking.oldlap.SimpleFastLAPTrackerFactory', priority=10.0, enabled=true, pluginType=SpotTrackerFactory [DEBUG] - class='org.scijava.ui.swing.widget.SwingChoiceRadioWidget', priority=1.0, enabled=true, pluginType=InputWidget [DEBUG] - class='net.imagej.legacy.DefaultLegacyService', priority=1.0, enabled=true, pluginType=Service [DEBUG] - class='net.imagej.ops.onthefly.JavassistOptimizer', priority=1.0, enabled=true, pluginType=Optimizer [DEBUG] - class='fiji.plugin.trackmate.visualization.threedviewer.SpotDisplayer3DFactory', priority=1.0, enabled=true, pluginType=ViewFactory [DEBUG] - class='fiji.plugin.trackmate.tracking.kdtree.NearestNeighborTrackerFactory', priority=1.0, enabled=true, pluginType=SpotTrackerFactory [DEBUG] - class='fiji.plugin.trackmate.features.spot.SpotContrastAndSNRAnalyzerFactory', priority=1.0, enabled=true, pluginType=SpotAnalyzerFactory [DEBUG] - class='net.imagej.ops.invert.InvertII', name='invert', priority=1.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.generated.AddConstantToDouble', name='add', priority=0.6, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.generated.AddConstantToLong', name='add', priority=0.5, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.generated.AddConstantToFloat', name='add', priority=0.4, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.generated.AddConstantToInteger', name='add', priority=0.3, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.generated.AddConstantToShort', name='add', priority=0.2, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.generated.AddConstantToByte', name='add', priority=0.1, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.plugins.commands.assign.AndDataValuesWith', menu='Process > Math > AND...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.app.AboutImageJ', label='About ImageJ...', menu='Help > About ImageJ...', iconPath='/icons/commands/information.png', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.AbsDataValues', menu='Process > Math > Abs...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.noisereduce.NoiseReductionAdaptiveMedian', menu='Process > Noise > Noise Reduction > Adaptive Median', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.restructure.AddAxis', menu='Image > Axes > Add Axis...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.restructure.AddData', menu='Image > Data > Add Data...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.overlay.AddImage', menu='Image > Overlay > Add Image', iconPath='/icons/commands/bricks.png', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.AddNoiseToDataValues', menu='Process > Noise > Add Noise...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.AddSpecifiedNoiseToDataValues', menu='Process > Noise > Add Specified Noise...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.AddToDataValues', menu='Process > Math > Add...', iconPath='/icons/commands/sum.png', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.noisereduce.NoiseReductionAlphaTrimmedMean', menu='Process > Noise > Noise Reduction > Alpha Trimmed Mean', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.animation.AnimationOptions', menu='Image > Animation > Animation Options...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.options.OptionsAppearance', menu='Edit > Options > Appearance...', priority=0.0, enabled=true, pluginType=OptionsPlugin [DEBUG] - class='net.imagej.ops.commands.threshold.GlobalThresholder', menu='Image > Threshold > Apply Threshold', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.options.OptionsArrowTool', menu='Edit > Options > Arrow Tool...', priority=0.0, enabled=true, pluginType=OptionsPlugin [DEBUG] - class='net.imagej.plugins.commands.display.AutoContrast', menu='Image > Adjust > Auto-Contrast', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.axispos.AxisPositionBackward', menu='Image > Axes > Axis Position Backward', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.axispos.AxisPositionForward', menu='Image > Axes > Axis Position Forward', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.misc.Benchmark', menu='Plugins > Utilities > Benchmark', iconPath='/icons/commands/bricks.png', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.imglib.Binner', menu='Image > Transform > Bin...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.binary.Binarize', menu='Process > Binary > Binarize...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.display.interactive.BrightnessContrast', menu='Image > Adjust > Brightness/Contrast...', iconPath='/icons/commands/contrast.png', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.debug.ButtonDemo', menu='Plugins > Sandbox > Button Demo', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.display.CaptureImage', menu='Plugins > Utilities > Capture Image', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.display.CaptureScreen', menu='Plugins > Utilities > Capture Screen', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.typechange.TypeChanger', menu='Image > Type > Change...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.display.ChannelsTool', menu='Image > Color > Channels Tool...', iconPath='/icons/commands/color_wheel.png', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.options.OptionsChannels', menu='Edit > Options > Channels...', priority=0.0, enabled=true, pluginType=OptionsPlugin [DEBUG] - class='org.scijava.plugins.commands.io.ClearRecent', label='Clear Recent', menu='File > Open Recent > Clear List', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='org.scijava.plugins.commands.display.Close', menu='File > Close', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.binary.CloseBinaryImage', menu='Process > Binary > Close', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='org.scijava.plugins.commands.display.CloseAll', menu='File > Close All', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.options.OptionsCompatibility', menu='Edit > Options > Compatibility...', priority=0.0, enabled=true, pluginType=OptionsPlugin [DEBUG] - class='net.imagej.options.OptionsCompiler', menu='Edit > Options > Compiler...', priority=0.0, enabled=true, pluginType=OptionsPlugin [DEBUG] - class='net.imagej.plugins.commands.assign.noisereduce.NoiseReductionContraharmonicMean', menu='Process > Noise > Noise Reduction > Contraharmonic Mean', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.options.OptionsConversions', menu='Edit > Options > Conversions...', priority=0.0, enabled=true, pluginType=OptionsPlugin [DEBUG] - class='net.imagej.ops.commands.convert.ConvertImgPlus', menu='Image > Convert', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.ops.commands.convolve.Convolve', menu='Image > Convolve', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.app.CopyToSystem', menu='Edit > Copy To System', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.binary.CreateMask', menu='Process > Binary > Create Mask...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.app.CreateShortcut', menu='Plugins > Shortcuts > Create Shortcut...', iconPath='/icons/commands/bricks.png', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.imglib.CropImage', menu='Image > Crop', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.options.OptionsDicom', menu='Edit > Options > DICOM...', priority=0.0, enabled=true, pluginType=OptionsPlugin [DEBUG] - class='net.imagej.options.OptionsOverlay', label='Default Overlay Settings', menu='Image > Overlay > Overlay Options...', priority=0.0, enabled=true, pluginType=OptionsPlugin [DEBUG] - class='net.imagej.plugins.commands.restructure.DeleteAxis', menu='Image > Axes > Delete Axis...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.restructure.DeleteData', menu='Image > Data > Delete Data...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.display.interactive.DeleteThreshold', menu='Image > Adjust > Delete Threshold', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.display.DeselectOverlays', menu='Edit > Selection > Deselect Overlays', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='org.scijava.ui.swing.commands.DialogPromptDemo', menu='Plugins > Sandbox > Dialog Prompt Demo', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.binary.DilateBinaryImage', menu='Process > Binary > Dilate', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.DivideDataValuesBy', menu='Process > Math > Divide...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='org.scijava.plugins.commands.debug.DumpStack', menu='Plugins > Debug > Dump Stack', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.imglib.DuplicateImage', menu='Image > Duplicate', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.imglib.DuplicateImageContext', menu='Duplicate...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.correlate.ShadowsEast', menu='Process > Shadows > East', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.restructure.EditAxes', menu='Image > Axes > Edit Axes...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.EquationDataValues', menu='Process > Math > Equation...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.binary.ErodeBinaryImage', menu='Process > Binary > Erode', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.ExpDataValues', menu='Process > Math > Exp...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.FillDataValues', menu='Edit > Fill', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='org.scijava.ui.swing.commands.CommandFinder', menu='Plugins > Utilities > Find Commands...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.neigh.FindEdges', menu='Process > Find Edges', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.display.Flatten', menu='Image > Overlay > Flatten', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.restructure.FlipAxis', menu='Image > Transform > Flip Axis', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.rotate.FlipHorizontally', menu='Image > Transform > Flip Horizontally', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.rotate.FlipVertically', menu='Image > Transform > Flip Vertically', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.tools.FloodFillToolConfig', label='Flood Fill Tool', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.options.OptionsFont', menu='Edit > Options > Fonts...', priority=0.0, enabled=true, pluginType=OptionsPlugin [DEBUG] - class='net.imagej.plugins.commands.overlay.FromOverlayManager', menu='Image > Overlay > From Overlay Manager', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.GammaDataValues', menu='Process > Math > Gamma...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.imglib.GaussianBlur', menu='Process > Filters > Gaussian Blur...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.noisereduce.NoiseReductionGeometricMean', menu='Process > Noise > Noise Reduction > Geometric Mean', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.noisereduce.NoiseReductionHarmonicMean', menu='Process > Noise > Noise Reduction > Harmonic Mean', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.display.HistogramPlot', menu='Analyze > Histogram Plot', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.calculator.ImageCalculator', menu='Process > Image Calculator...', iconPath='/icons/commands/calculator.png', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.io.OpenDataset', menu='File > Import > Image... 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class='net.imagej.plugins.commands.assign.InvertDataValues', menu='Edit > Invert...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.lut.LUTSelector', label='LUT Selector', menu='Image > Lookup Tables > Select...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.overlay.OverlayLabels', menu='Image > Overlay > Labels...', iconPath='/icons/commands/bricks.png', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.options.OptionsLineWidth', menu='Edit > Options > Line Width...', priority=0.0, enabled=true, pluginType=OptionsPlugin [DEBUG] - class='net.imagej.plugins.commands.app.ListShortcuts', menu='Plugins > Shortcuts > List Shortcuts...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.LogDataValues', menu='Process > Math > Log...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='org.scijava.ui.swing.options.OptionsLookAndFeel', menu='Edit > Options > Look and Feel...', priority=0.0, enabled=true, pluginType=OptionsPlugin [DEBUG] - class='net.imagej.plugins.commands.binary.MakeBinary', menu='Process > Binary > Make Binary...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.overlay.ConvertToMask', menu='Process > Binary > Make Mask Overlay...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.debug.MandelbrotSetImage', menu='Plugins > Sandbox > Mandelbrot Set', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.MaxDataValues', menu='Process > Math > Max...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMax', menu='Process > Noise > Noise Reduction > Maximum', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMean', menu='Process > Noise > Noise Reduction > Mean', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.debug.MeasurementDemo', menu='Plugins > Sandbox > Measurement Demo', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMedian', menu='Process > Noise > Noise Reduction > Median', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.options.OptionsMemoryAndThreads', menu='Edit > Options > Memory & Threads...', priority=0.0, enabled=true, pluginType=OptionsPlugin [DEBUG] - class='net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMidpoint', menu='Process > Noise > Noise Reduction > Midpoint', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.MinDataValues', menu='Process > Math > Min...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMin', menu='Process > Noise > Noise Reduction > Minimum', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.options.OptionsMisc', menu='Edit > Options > Misc...', priority=0.0, enabled=true, pluginType=OptionsPlugin [DEBUG] - class='net.imagej.legacy.plugin.MixedWorldCommand', menu='Plugins > Sandbox > Mixed World Command', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.debug.MultidimImage', menu='Plugins > Sandbox > Multidimensional Test Image', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.MultiplyDataValuesBy', menu='Process > Math > Multiply...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.imglib.NanBackground', menu='Process > Math > NaN Background', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.io.NewImage', label='New Image...', menu='File > New > Image...', iconPath='/icons/commands/picture.png', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.correlate.ShadowsNorth', menu='Process > Shadows > North', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.correlate.ShadowsNortheast', menu='Process > Shadows > Northeast', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.correlate.ShadowsNorthwest', menu='Process > Shadows > Northwest', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.assign.OrDataValuesWith', menu='Process > Math > OR...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.binary.OpenBinaryImage', menu='Process > Binary > Open', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='org.scijava.plugins.commands.io.OpenFile', menu='File > Open...', iconPath='/icons/commands/folder_picture.png', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.zoom.ZoomOriginalScale', menu='Image > Zoom > Original Scale', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.display.interactive.OrthogonalViews', menu='Image > Stacks > Orthogonal Views', iconPath='/icons/commands/bricks.png', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.ui.swing.commands.OverlayManager', menu='Image > Overlay > Overlay Manager', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.overlay.OverlayProperties', label='Overlay Properties...', menu='Image > Overlay > Properties...', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.tools.PaintBrushToolConfig', label='Paintbrush Tool', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='org.scijava.plugins.commands.debug.ParamAssignOrder', menu='Plugins > Sandbox > Parameter Assignment Order', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.tools.PencilToolConfig', label='Pencil Tool', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='fiji.DefaultFijiService', priority=0.0, enabled=true, pluginType=Service [DEBUG] - class='fiji.patches.FijiAppConfiguration', priority=0.0, enabled=true, pluginType=LegacyAppConfiguration [DEBUG] - class='fiji.patches.OldLegacyEditor', priority=0.0, enabled=true, pluginType=LegacyEditor [DEBUG] - 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class='net.imagej.ops.generated.arithmetic.real.RealZero', name='zero', priority=0.0, enabled=true, pluginType=Op [DEBUG] - class='fiji.plugin.trackmate.tracking.ManualTrackerFactory', priority=-1.0, enabled=true, pluginType=SpotTrackerFactory [DEBUG] - class='net.imagej.ops.map.ParallelMap', name='map', priority=-95.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.map.ParallelMapI2I', name='map', priority=-97.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.map.ParallelMapI2R', name='map', priority=-98.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.crop.CropImgPlus', name='crop', aliases='slice', priority=-99.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.crop.CropLabeling', name='crop', aliases='slice', priority=-99.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.map.MapII2II', name='map', priority=-99.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.project.parallel.DefaultProjectP', name='project', priority=-99.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.statistics.StdDevRealTypeDirect', name='stddev', priority=-99.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.statistics.VarianceRealTypeDirect', name='variance', priority=-99.0, enabled=true, pluginType=Op [DEBUG] - class='org.scijava.plugins.scripting.java.MainJavaRunner', priority=-100.0, enabled=true, pluginType=JavaRunner [DEBUG] - class='net.imagej.render.DummyRenderingService', priority=-100.0, enabled=true, pluginType=Service [DEBUG] - class='net.imagej.display.DummyScreenCaptureService', priority=-100.0, enabled=true, pluginType=Service [DEBUG] - class='net.imagej.io.DatasetIOPlugin', priority=-100.0, enabled=true, pluginType=IOPlugin [DEBUG] - class='net.imagej.legacy.plugin.DefaultLegacyOpener', priority=-100.0, enabled=true, pluginType=LegacyOpener [DEBUG] - class='net.imagej.legacy.plugin.DefaultLegacyEditor', priority=-100.0, enabled=true, pluginType=LegacyEditor [DEBUG] - class='org.scijava.ui.dnd.FileDragAndDropHandler', priority=-100.0, enabled=true, pluginType=DragAndDropHandler [DEBUG] - class='org.scijava.display.DefaultTextDisplay', priority=-100.0, enabled=true, pluginType=Display [DEBUG] - class='org.scijava.log.StderrLogService', priority=-100.0, enabled=true, pluginType=Service [DEBUG] - class='org.scijava.platform.DefaultAppEventService', priority=-100.0, enabled=true, pluginType=Service [DEBUG] - class='io.scif.formats.APNGFormat$APNGTranslator', priority=-100.0, enabled=true, pluginType=Translator [DEBUG] - class='io.scif.formats.qt.NativeQTFormat$NativeQTTranslator', priority=-100.0, enabled=true, pluginType=Translator [DEBUG] - class='io.scif.formats.FakeFormat$FakeTranslator', priority=-100.0, enabled=true, pluginType=Translator [DEBUG] - class='io.scif.formats.MicromanagerFormat$MicromanagerTranslator', priority=-100.0, enabled=true, pluginType=Translator [DEBUG] - class='io.scif.services.DefaultInitializeService', priority=-100.0, enabled=true, pluginType=Service [DEBUG] - class='io.scif.formats.AVIFormat$Translator', priority=-100.0, enabled=true, pluginType=Translator [DEBUG] - class='io.scif.formats.ICSFormat$ICSTranslator', priority=-100.0, enabled=true, pluginType=Translator [DEBUG] - class='io.scif.formats.EPSFormat$EPSTranslator', priority=-100.0, enabled=true, pluginType=Translator [DEBUG] - class='io.scif.formats.ImageIOFormat$ImageIOTranslator', priority=-100.0, enabled=true, pluginType=Translator [DEBUG] - class='io.scif.formats.qt.LegacyQTFormat$LegacyQTTranslator', priority=-100.0, enabled=true, pluginType=Translator [DEBUG] - class='io.scif.ome.formats.OMEXMLFormat$OMEXMLTranslator', priority=-100.0, enabled=true, pluginType=Translator [DEBUG] - class='io.scif.formats.qt.LegacyQTFormat', name='QuickTime', priority=-100.0, enabled=true, pluginType=Format [DEBUG] - class='org.scijava.app.SciJavaApp', name='SciJava', priority=-100.0, enabled=true, pluginType=App [DEBUG] - class='io.scif.formats.JPEGTileFormat', name='Tile JPEG', priority=-100.0, enabled=true, pluginType=Format [DEBUG] - class='net.imagej.ops.arithmetic.add.AddConstantToNumericType', name='add', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='org.scijava.ui.awt.AWTUI', name='awt', priority=-100.0, enabled=true, pluginType=UserInterface [DEBUG] - class='net.imagej.ops.crop.CropRAI', name='crop', aliases='slice', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.map.MapII2RAI', name='map', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.map.MapRAI2III', name='map', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.map.MapI', name='map', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.neighborhood.MapNeighborhood', name='map', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.statistics.MaxRealType', name='max', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.statistics.MeanRealType', name='mean', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.statistics.MedianRealType', name='median', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.statistics.MinRealType', name='min', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.project.ProjectRAI2II', name='project', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.misc.SizeIterableInterval', name='size', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.statistics.StdDevRealType', name='stddev', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.statistics.SumRealType', name='sum', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='org.scijava.ui.swing.mdi.SwingMdiUI', name='swing-mdi', priority=-100.0, enabled=true, pluginType=UserInterface [DEBUG] - class='net.imagej.ops.statistics.VarianceRealType', name='variance', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='org.scijava.text.io.TextIOPlugin', priority=-101.0, enabled=true, pluginType=IOPlugin [DEBUG] - class='net.imagej.ops.map.MapI2I', name='map', priority=-101.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.plugins.tools.WandTool', name='Wand', description='Wand (tracing) tool', iconPath='/icons/tools/wand.png', priority=-110.0, enabled=false, pluginType=Tool [DEBUG] - class='net.imagej.ui.swing.tools.SwingTextTool', name='Text', description='Text tool', iconPath='/icons/tools/text.png', priority=-115.0, enabled=false, pluginType=Tool [DEBUG] - class='net.imagej.plugins.tools.ZoomTool', name='Zoom', description='Magnifying glass (or use "+" and "-" keys)', iconPath='/icons/tools/zoom.png', priority=-200.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.plugins.tools.PanTool', name='Pan', description='Scrolling tool (or press space bar and drag)', iconPath='/icons/tools/pan.png', priority=-201.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.plugins.tools.PaintBrushTool', name='Paintbrush', description='Paintbrush Tool', iconPath='/icons/tools/paintbrush.png', priority=-300.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.plugins.tools.PencilTool', name='Pencil', description='Pencil Tool', iconPath='/icons/tools/pencil.png', priority=-301.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.plugins.tools.SprayCanTool', name='SprayCan', label='Spray Can', description='Spray Can Tool', iconPath='/icons/tools/spray-can.png', priority=-303.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.plugins.tools.FloodFillTool', name='FloodFill', label='Flood Fill', description='Flood Fill Tool', iconPath='/icons/tools/flood-fill.png', priority=-304.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.plugins.tools.ArrowTool', name='Arrow', description='Arrow Tool', iconPath='/icons/tools/arrow.png', priority=-305.0, enabled=false, pluginType=Tool [DEBUG] - class='net.imagej.plugins.tools.FgColorTool', name='Foreground', iconPath='/icons/tools/blank.png', priority=-500.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.plugins.tools.BgColorTool', name='Background', iconPath='/icons/tools/blankBlack.png', priority=-501.0, enabled=true, pluginType=Tool [DEBUG] - class='io.scif.ome.formats.OMETIFFFormat', priority=-9998.0, enabled=true, pluginType=Format [DEBUG] - class='io.scif.ome.formats.OMETIFFFormat$OMETIFFTranslator', priority=-9998.0, enabled=true, pluginType=Translator [DEBUG] - class='org.scijava.module.process.LoadInputsPreprocessor', priority=-9999.0, enabled=true, pluginType=PreprocessorPlugin [DEBUG] - class='io.scif.formats.TIFFFormat$TIFFTranslator', priority=-9999.0, enabled=true, pluginType=Translator [DEBUG] - class='io.scif.formats.TIFFFormat', name='Tagged Image File Format', priority=-9999.0, enabled=true, pluginType=Format [DEBUG] - class='org.scijava.ui.FilePreprocessor', priority=-9999.5, enabled=true, pluginType=PreprocessorPlugin [DEBUG] - class='org.scijava.ui.awt.widget.AWTInputHarvester', priority=-10000.0, enabled=true, pluginType=PreprocessorPlugin [DEBUG] - class='org.scijava.plugins.text.plain.PlainTextFormat', priority=-10000.0, enabled=true, pluginType=TextFormat [DEBUG] - class='org.scijava.ui.swing.widget.SwingInputHarvester', priority=-10000.0, enabled=true, pluginType=PreprocessorPlugin [DEBUG] - class='org.scijava.ui.swing.widget.SwingMdiInputHarvester', priority=-10000.0, enabled=true, pluginType=PreprocessorPlugin [DEBUG] - class='net.imagej.legacy.ui.LegacyInputHarvester', priority=-10000.0, enabled=true, pluginType=PreprocessorPlugin [DEBUG] - class='org.scijava.display.DisplayPostprocessor', priority=-10000.0, enabled=true, pluginType=PostprocessorPlugin [DEBUG] - class='net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter', priority=-10000.0, enabled=true, pluginType=JHotDrawAdapter [DEBUG] - class='io.scif.DefaultTranslator', priority=-10000.0, enabled=true, pluginType=Translator [DEBUG] - class='org.scijava.platform.DefaultPlatform', name='Default', priority=-10000.0, enabled=true, pluginType=Platform [DEBUG] - class='net.imagej.plugins.tools.AcceleratorHandler', name='Keyboard Shortcuts', priority=-10000.0, enabled=true, pluginType=Tool [DEBUG] - class='io.scif.formats.MinimalTIFFFormat', name='Minimal TIFF', priority=-10000.0, enabled=true, pluginType=Format [DEBUG] - class='net.imagej.ops.arithmetic.add.AddConstantToImageFunctional', name='add', priority=-10000.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.chunker.InterleavedChunker', name='chunker', priority=-10000.0, enabled=true, pluginType=Op [DEBUG] - class='org.scijava.module.process.CheckInputsPreprocessor', priority=-10001.0, enabled=true, pluginType=PreprocessorPlugin [DEBUG] - class='org.scijava.module.process.SaveInputsPreprocessor', priority=-10001.0, enabled=true, pluginType=PreprocessorPlugin [DEBUG] - class='io.scif.formats.TIFFJAIFormat', name='Tagged Image File Format', priority=-10001.0, enabled=true, pluginType=Format [DEBUG] - class='net.imagej.ops.misc.SizeIterable', name='size', priority=-Infinity, enabled=true, pluginType=Op [WARNING] 1 exceptions occurred during plugin discovery. [DEBUG] io.scif.ome.commands.OMEXMLToolCommand java.lang.ClassCastException: io.scif.ome.commands.OMEXMLToolCommand: cannot cast object of type java.lang.String to java.lang.Class at org.scijava.annotations.IndexItem.cce(IndexItem.java:237) at org.scijava.annotations.IndexItem.adapt(IndexItem.java:195) at org.scijava.annotations.IndexItem.access$000(IndexItem.java:47) at org.scijava.annotations.IndexItem$1.invoke(IndexItem.java:102) at com.sun.proxy.$Proxy0.type(Unknown Source) at org.scijava.plugin.DefaultPluginFinder.createInfo(DefaultPluginFinder.java:101) at org.scijava.plugin.DefaultPluginFinder.findPlugins(DefaultPluginFinder.java:81) at org.scijava.plugin.DefaultPluginFinder.findPlugins(DefaultPluginFinder.java:49) at org.scijava.plugin.PluginIndex.discover(PluginIndex.java:107) at org.scijava.Context.(Context.java:240) at org.scijava.Context.(Context.java:203) at org.scijava.Context.(Context.java:142) at org.scijava.Context.(Context.java:98) at org.scijava.Context.(Context.java:86) at net.imagej.ImageJ.(ImageJ.java:82) at net.imagej.Main.launch(Main.java:61) at net.imagej.Main.main(Main.java:73) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at net.imagej.launcher.ClassLauncher.launch(ClassLauncher.java:258) at net.imagej.launcher.ClassLauncher.run(ClassLauncher.java:184) at net.imagej.launcher.ClassLauncher.main(ClassLauncher.java:76) Caused by: java.lang.ClassNotFoundException: io.scif.cli.SCIFIOToolCommand at java.net.URLClassLoader$1.run(URLClassLoader.java:202) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(URLClassLoader.java:190) at java.lang.ClassLoader.loadClass(ClassLoader.java:306) at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301) at java.lang.ClassLoader.loadClass(ClassLoader.java:247) at org.scijava.annotations.IndexItem.adapt(IndexItem.java:192) ... 22 more [DEBUG] Created service 'org.scijava.plugin.DefaultPluginService' in 30 ms [DEBUG] Creating service: org.scijava.object.DefaultObjectService log4j:WARN No appenders could be found for logger (org.bushe.swing.event.EventService). log4j:WARN Please initialize the log4j system properly. log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info. [DEBUG] Created service 'org.scijava.object.DefaultObjectService' in 5 ms [DEBUG] Creating service: org.scijava.prefs.DefaultPrefService [DEBUG] Created service 'org.scijava.prefs.DefaultPrefService' in 2 ms [DEBUG] Creating service: org.scijava.convert.DefaultConvertService [DEBUG] Created service 'org.scijava.convert.DefaultConvertService' in 2 ms [DEBUG] Created service 'org.scijava.module.DefaultModuleService' in 53 ms [DEBUG] Creating service: net.imagej.DefaultDatasetService [DEBUG] Creating service: io.scif.services.DefaultFormatService [DEBUG] Created service 'io.scif.services.DefaultFormatService' in 2 ms [DEBUG] Creating service: net.imagej.types.DefaultDataTypeService [INFO] Found 11 DataType plugins. [DEBUG] Created service 'net.imagej.types.DefaultDataTypeService' in 16 ms [DEBUG] Created service 'net.imagej.DefaultDatasetService' in 25 ms [DEBUG] Creating service: org.scijava.display.DefaultDisplayService [DEBUG] Created service 'org.scijava.display.DefaultDisplayService' in 3 ms [DEBUG] Creating service: net.imagej.display.DefaultImageDisplayService [DEBUG] Created service 'net.imagej.display.DefaultImageDisplayService' in 2 ms [DEBUG] Created service 'net.imagej.lut.DefaultLUTService' in 85 ms [DEBUG] Creating service: org.scijava.script.DefaultScriptService [DEBUG] Creating service: org.scijava.command.DefaultCommandService [DEBUG] Created service 'org.scijava.command.DefaultCommandService' in 17 ms [DEBUG] Created service 'org.scijava.script.DefaultScriptService' in 24 ms [DEBUG] Creating service: net.imagej.legacy.DefaultLegacyService [DEBUG] Creating service: net.imagej.display.DefaultOverlayService [DEBUG] Creating service: org.scijava.options.DefaultOptionsService [DEBUG] Created service 'org.scijava.options.DefaultOptionsService' in 1 ms [DEBUG] Creating service: net.imagej.ui.awt.AWTRenderingService [DEBUG] Created service 'net.imagej.ui.awt.AWTRenderingService' in 1 ms [DEBUG] Created service 'net.imagej.display.DefaultOverlayService' in 5 ms [DEBUG] Creating service: net.imagej.threshold.DefaultThresholdService [DEBUG] Created service 'net.imagej.threshold.DefaultThresholdService' in 3 ms [DEBUG] Creating service: org.scijava.menu.DefaultMenuService [DEBUG] Created service 'org.scijava.menu.DefaultMenuService' in 2 ms [DEBUG] Creating service: org.scijava.app.DefaultStatusService [DEBUG] Creating service: org.scijava.app.DefaultAppService [DEBUG] Created service 'org.scijava.app.DefaultAppService' in 2 ms [DEBUG] Created service 'org.scijava.app.DefaultStatusService' in 3 ms [INFO] Found 8 ScriptLanguage plugins. [INFO] Found 0 scripts [INFO] Overriding Upload Sample Image; identifier: command:net.imagej.plugins.commands.upload.SampleImageUploader; jar: file:/Applications/Fiji.app/jars/imagej-plugins-commands-0.2.6.jar [DEBUG] Created service 'net.imagej.legacy.DefaultLegacyService' in 1096 ms [DEBUG] Creating service: fiji.DefaultFijiService [DEBUG] Created service 'fiji.DefaultFijiService' in 1 ms [DEBUG] Creating service: net.imglib2.meta.units.DefaultUnitService [DEBUG] Created service 'net.imglib2.meta.units.DefaultUnitService' in 10 ms [DEBUG] Creating service: net.imagej.ui.awt.AWTScreenCaptureService [DEBUG] Created service 'net.imagej.ui.awt.AWTScreenCaptureService' in 0 ms [DEBUG] Creating service: org.scijava.ui.swing.SwingIconService [DEBUG] Created service 'org.scijava.ui.swing.SwingIconService' in 1 ms [DEBUG] Creating service: net.imagej.updater.DefaultUpdateService [DEBUG] Created service 'net.imagej.updater.DefaultUpdateService' in 6 ms [DEBUG] Creating service: net.imagej.updater.DefaultUploaderService [DEBUG] Created service 'net.imagej.updater.DefaultUploaderService' in 1 ms [DEBUG] Creating service: org.scijava.plugins.scripting.java.DefaultJavaService [DEBUG] Created service 'org.scijava.plugins.scripting.java.DefaultJavaService' in 1 ms [DEBUG] Creating service: net.imagej.DefaultImgPlusService [DEBUG] Created service 'net.imagej.DefaultImgPlusService' in 0 ms [DEBUG] Creating service: net.imagej.ui.DefaultImageJUIService [DEBUG] Created service 'net.imagej.ui.DefaultImageJUIService' in 2 ms [DEBUG] Creating service: net.imagej.autoscale.DefaultAutoscaleService [DEBUG] Created service 'net.imagej.autoscale.DefaultAutoscaleService' in 1 ms [DEBUG] Creating service: net.imagej.operator.DefaultCalculatorService [DEBUG] Created service 'net.imagej.operator.DefaultCalculatorService' in 2 ms [DEBUG] Creating service: net.imagej.display.DefaultZoomService [DEBUG] Creating service: org.scijava.input.DefaultInputService [DEBUG] Created service 'org.scijava.input.DefaultInputService' in 2 ms [DEBUG] Created service 'net.imagej.display.DefaultZoomService' in 3 ms [DEBUG] Creating service: net.imagej.display.DefaultWindowService [DEBUG] Created service 'net.imagej.display.DefaultWindowService' in 1 ms [DEBUG] Creating service: net.imagej.animation.DefaultAnimationService [DEBUG] Created service 'net.imagej.animation.DefaultAnimationService' in 2 ms [DEBUG] Creating service: net.imagej.measure.DefaultStatisticsService [DEBUG] Created service 'net.imagej.measure.DefaultStatisticsService' in 2 ms [DEBUG] Creating service: net.imagej.measure.DefaultMeasurementService [DEBUG] Created service 'net.imagej.measure.DefaultMeasurementService' in 0 ms [DEBUG] Creating service: net.imagej.sampler.DefaultSamplerService [DEBUG] Created service 'net.imagej.sampler.DefaultSamplerService' in 2 ms [DEBUG] Creating service: net.imagej.ops.DefaultOpService [DEBUG] Creating service: net.imagej.ops.DefaultOpMatchingService [DEBUG] Created service 'net.imagej.ops.DefaultOpMatchingService' in 2 ms [DEBUG] Created service 'net.imagej.ops.DefaultOpService' in 2 ms [DEBUG] Creating service: org.scijava.ui.DefaultUIService [DEBUG] Creating service: org.scijava.platform.DefaultPlatformService [DEBUG] Creating service: org.scijava.platform.DefaultAppEventService [DEBUG] Created service 'org.scijava.platform.DefaultAppEventService' in 1 ms [INFO] Found 2 Platform plugins. [DEBUG] Configuring platform: org.scijava.plugins.platforms.macosx.MacOSXPlatform [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false items[0] = label='About ImageJ...', iconPath='/icons/commands/information.png', priority=0.0, enabled=true, pluginType=Command items[1] = label='Preferences', priority=0.0, enabled=true, pluginType=Command items[2] = label='Quit', iconPath='/icons/commands/door_in.png', priority=0.0, enabled=true, pluginType=Command,null,null), called from non-EDT Thread:null [DEBUG] Configuring platform: org.scijava.platform.DefaultPlatform [DEBUG] Created service 'org.scijava.platform.DefaultPlatformService' in 111 ms [DEBUG] Creating service: org.scijava.tool.DefaultToolService [DEBUG] Created service 'org.scijava.tool.DefaultToolService' in 4 ms [DEBUG] Created service 'org.scijava.ui.DefaultUIService' in 117 ms [DEBUG] Creating service: org.scijava.ui.dnd.DefaultDragAndDropService [DEBUG] Created service 'org.scijava.ui.dnd.DefaultDragAndDropService' in 3 ms [DEBUG] Creating service: org.scijava.text.DefaultTextService [DEBUG] Created service 'org.scijava.text.DefaultTextService' in 2 ms [DEBUG] Creating service: org.scijava.io.DefaultRecentFileService [DEBUG] Created service 'org.scijava.io.DefaultRecentFileService' in 4 ms [DEBUG] Creating service: org.scijava.io.DefaultIOService [DEBUG] Created service 'org.scijava.io.DefaultIOService' in 1 ms [DEBUG] Creating service: org.scijava.widget.DefaultWidgetService [INFO] Found 22 InputWidget plugins. [DEBUG] Created service 'org.scijava.widget.DefaultWidgetService' in 2 ms [DEBUG] Creating service: org.scijava.welcome.DefaultWelcomeService [DEBUG] Created service 'org.scijava.welcome.DefaultWelcomeService' in 3 ms [DEBUG] Creating service: org.scijava.script.DefaultScriptHeaderService [DEBUG] Created service 'org.scijava.script.DefaultScriptHeaderService' in 1 ms [DEBUG] Creating service: org.scijava.event.DefaultEventHistory [DEBUG] Created service 'org.scijava.event.DefaultEventHistory' in 1 ms [DEBUG] Creating service: org.scijava.console.DefaultConsoleService [DEBUG] Created service 'org.scijava.console.DefaultConsoleService' in 1 ms [DEBUG] Creating service: net.imagej.plugins.commands.restructure.SplitChannelsContextMonitor [DEBUG] Created service 'net.imagej.plugins.commands.restructure.SplitChannelsContextMonitor' in 1 ms [DEBUG] Creating service: net.imagej.ui.swing.overlay.JHotDrawService [DEBUG] Created service 'net.imagej.ui.swing.overlay.JHotDrawService' in 1 ms [DEBUG] Creating service: io.scif.io.DefaultNIOService [DEBUG] Created service 'io.scif.io.DefaultNIOService' in 1 ms [DEBUG] Creating service: io.scif.img.converters.DefaultPlaneConverterService [DEBUG] Created service 'io.scif.img.converters.DefaultPlaneConverterService' in 1 ms [DEBUG] Creating service: io.scif.img.DefaultImgUtilityService [DEBUG] Created service 'io.scif.img.DefaultImgUtilityService' in 2 ms [DEBUG] Creating service: io.scif.gui.DefaultGUIService [DEBUG] Created service 'io.scif.gui.DefaultGUIService' in 2 ms [DEBUG] Creating service: io.scif.xml.DefaultXMLService [DEBUG] Created service 'io.scif.xml.DefaultXMLService' in 20 ms [DEBUG] Creating service: io.scif.refs.DefaultRefManagerService [DEBUG] Created service 'io.scif.refs.DefaultRefManagerService' in 1 ms [DEBUG] Creating service: io.scif.services.DefaultTranslatorService [DEBUG] Created service 'io.scif.services.DefaultTranslatorService' in 0 ms [DEBUG] Creating service: io.scif.codec.DefaultCodecService [DEBUG] Created service 'io.scif.codec.DefaultCodecService' in 1 ms [DEBUG] Creating service: io.scif.img.cell.cache.MapDBCache [DEBUG] Created service 'io.scif.img.cell.cache.MapDBCache' in 3 ms [DEBUG] Creating service: io.scif.DefaultMetadataService [DEBUG] Created service 'io.scif.DefaultMetadataService' in 1 ms [DEBUG] Creating service: io.scif.services.DefaultFilePatternService [DEBUG] Created service 'io.scif.services.DefaultFilePatternService' in 1 ms [DEBUG] Creating service: io.scif.formats.tiff.DefaultTiffService [DEBUG] Created service 'io.scif.formats.tiff.DefaultTiffService' in 1 ms [DEBUG] Creating service: io.scif.services.DefaultLocationService [DEBUG] Created service 'io.scif.services.DefaultLocationService' in 1 ms [DEBUG] Creating service: io.scif.services.JAIIIOServiceImpl [DEBUG] Created service 'io.scif.services.JAIIIOServiceImpl' in 3 ms [DEBUG] Creating service: io.scif.formats.qt.DefaultQTJavaService [DEBUG] Created service 'io.scif.formats.qt.DefaultQTJavaService' in 1 ms [DEBUG] Creating service: io.scif.ome.services.DefaultOMEXMLService [DEBUG] Created service 'io.scif.ome.services.DefaultOMEXMLService' in 15 ms [DEBUG] Creating service: io.scif.ome.services.DefaultOMEMetadataService [DEBUG] Created service 'io.scif.ome.services.DefaultOMEMetadataService' in 3 ms [DEBUG] Creating service: net.imagej.render.DummyRenderingService [DEBUG] Created service 'net.imagej.render.DummyRenderingService' in 1 ms [DEBUG] Creating service: net.imagej.display.DummyScreenCaptureService [DEBUG] Created service 'net.imagej.display.DummyScreenCaptureService' in 0 ms [DEBUG] Creating service: io.scif.services.DefaultInitializeService [DEBUG] Created service 'io.scif.services.DefaultInitializeService' in 2 ms [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false,null,null), called from non-EDT Thread:null [DEBUG] Received command line arguments: [INFO] Discovered user interface: net.imagej.legacy.ui.LegacyUI [INFO] Discovered user interface: org.scijava.ui.swing.sdi.SwingSDIUI [INFO] Discovered user interface: org.scijava.ui.awt.AWTUI [INFO] Discovered user interface: org.scijava.ui.swing.mdi.SwingMdiUI [INFO] Launching user interface: net.imagej.legacy.ui.LegacyUI [INFO] Found 20 OptionsPlugin plugins. [INFO] Found 1 Converter plugins. [INFO] Found 5 App plugins. [INFO] Found 17 ThresholdMethod plugins. [INFO] Found 3 JavaRunner plugins. [INFO] Found 2 AutoscaleMethod plugins. [INFO] Found 13 CalculatorOp plugins. [INFO] Found 1 Optimizer plugins. [INFO] Found 26 Tool plugins. [INFO] Found 4 DragAndDropHandler plugins. [INFO] Found 2 TextFormat plugins. [INFO] Found 4 IOPlugin plugins. [INFO] Found 1 ScriptHeader plugins. [INFO] Found 11 ConsoleArgument plugins. [INFO] Found 3 PlaneConverter plugins. [INFO] Found 30 Translator plugins. [INFO] Found 16 Codec plugins. [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false ui = legacy,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false progress = -1 maximum = -1 status = Running command: Up-to-date check warning = false,null,null), called from non-EDT Thread:null file:/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Classes/classes.jar [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates,null,null), called from non-EDT Thread:null [DEBUG] Executing module: net.imagej.updater.CheckForUpdates@e1cba87 [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.module.process.DebugPreprocessor@4b48f7e0,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.module.process.ValidityPreprocessor@27013985,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates processor = net.imagej.display.ActiveImagePreprocessor@41675ec4,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates processor = net.imagej.legacy.plugin.ActiveImagePlusPreprocessor@697eb767,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.ui.UIPreprocessor@7e3b014c,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.display.ActiveDisplayPreprocessor@53d26552,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.module.process.GatewayPreprocessor@19fa157c,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.module.process.ServicePreprocessor@71988d36,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.module.process.InitPreprocessor@565f0e7d,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.module.process.LoadInputsPreprocessor@7ab05cd7,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.ui.FilePreprocessor@509f662e,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.ui.awt.widget.AWTInputHarvester@10ed7f5c,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.ui.swing.widget.SwingInputHarvester@2712ee9,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.ui.swing.widget.SwingMdiInputHarvester@54bec43f,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates processor = net.imagej.legacy.ui.LegacyInputHarvester@7dcb3cd,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.module.process.CheckInputsPreprocessor@2aa05bc3,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.module.process.SaveInputsPreprocessor@5e87512,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates,null,null), called from non-EDT Thread:null [DEBUG] INPUTS: [DEBUG] OUTPUTS: [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.module.process.DebugPostprocessor@696e59da,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.display.DisplayPostprocessor@4bcd2d49,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false module = net.imagej.updater.CheckForUpdates,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false progress = -1 maximum = -1 status = Command finished: Up-to-date check warning = false,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@35a271f5 consumed = false focus = false,null,null), called from non-EDT Thread:null