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PS H:\> cd C:\Users\Public\Documents\Fiji\ PS C:\Users\Public\Documents\Fiji> .\ImageJ-win64.exe --debug PS C:\Users\Public\Documents\Fiji> JRE not found in 'C:\Users\Public\DOCUME~1\Fiji/jre' JAVA_HOME contains a JRE: 'C:\Users\Public\DOCUME~1\Fiji/java/win64/jdk1.6.0_24//jre' Available RAM: 8181MB, using 3/4 of that: 6136MB javaw -Dpython.cachedir.skip=true -Dplugins.dir=C:\\Users\\Public\\DOCUME~1\\Fiji -Xmx6136m -Xincgc -XX:PermSize=128m -D java.class.path=C:\\Users\\Public\\DOCUME~1\\Fiji/jars/imagej-launcher-3.1.6.jar -Dimagej.dir=C:\\Users\\Public\\DOCUME~ 1\\Fiji -Dij.dir=C:\\Users\\Public\\DOCUME~1\\Fiji -Dfiji.dir=C:\\Users\\Public\\DOCUME~1\\Fiji -Dfiji.defaultLibPath=bi n/server/jvm.dll -Dfiji.executable=C:\\Users\\Public\\Documents\\Fiji\\ImageJ-win64.exe -Dij.executable=C:\\Users\\Publi c\\Documents\\Fiji\\ImageJ-win64.exe -Djava.library.path=C:\\Users\\Public\\DOCUME~1\\Fiji/lib/win64;C:\\Users\\Public\\ DOCUME~1\\Fiji/mm/win64 -Dsun.java2d.noddraw=true -Dij.debug=true -Dscijava.log.level=debug net.imagej.launcher.ClassLau ncher -ijjarpath jars -ijjarpath plugins net.imagej.Main Using JAVA_HOME C:\Users\Public\DOCUME~1\Fiji/java/win64/jdk1.6.0_24//jre Opening Java library C:\Users\Public\DOCUME~1\Fiji/java/win64/jdk1.6.0_24//jre/bin/server/jvm.dll Adding option: -Djava.home=C:\Users\Public\DOCUME~1\Fiji/java/win64/jdk1.6.0_24/ ij1.plugin.dirs: null $HOME/.plugins: C:\Users\M1SRH\.plugins does not exist Launching main class net.imagej.Main with parameters [] Class loader = sun.misc.Launcher$AppClassLoader@138d107f Checking class loader: sun.misc.Launcher$AppClassLoader@138d107f Checking URL: file:/C:/Users/Public/Documents/Fiji/jars/imagej-launcher-3.1.6.jar Not Eclipse because first entry is: file:/C:/Users/Public/Documents/Fiji/jars/imagej-launcher-3.1.6.jar [DEBUG] Creating service: org.scijava.event.DefaultEventService [DEBUG] Creating service: org.scijava.log.StderrLogService [DEBUG] Created service 'org.scijava.log.StderrLogService' in 0 ms [DEBUG] Creating service: org.scijava.thread.DefaultThreadService [DEBUG] Created service 'org.scijava.thread.DefaultThreadService' in 0 ms [DEBUG] Created service 'org.scijava.event.DefaultEventService' in 94 ms [DEBUG] Creating service: net.imagej.legacy.display.LegacyImageDisplayService [DEBUG] Created service 'net.imagej.legacy.display.LegacyImageDisplayService' in 0 ms [DEBUG] Creating service: net.imagej.lut.DefaultLUTService [DEBUG] Creating service: org.scijava.module.DefaultModuleService [DEBUG] Creating service: org.scijava.plugin.DefaultPluginService [DEBUG] Found 920 plugins. [DEBUG] - class='org.scijava.convert.NullConverter', priority=Infinity, enabled=true, pluginType=Converter [DEBUG] - class='org.scijava.module.process.DebugPostprocessor', priority=Infinity, enabled=true, pluginType=Postprocess orPlugin [DEBUG] - class='org.scijava.module.process.DebugPreprocessor', priority=Infinity, enabled=true, pluginType=Preprocessor Plugin [DEBUG] - class='net.imagej.plugins.tools.KonamiHandler', name='Konami', priority=Infinity, enabled=true, pluginType=Too l [DEBUG] - class='org.scijava.event.DefaultEventService', priority=100000.0, enabled=true, pluginType=Service [DEBUG] - class='org.scijava.module.process.ValidityPreprocessor', priority=10001.0, enabled=true, pluginType=Preprocess orPlugin [DEBUG] - class='net.imagej.display.ActiveImagePreprocessor', priority=10000.0, enabled=true, pluginType=PreprocessorPlu gin [DEBUG] - class='net.imagej.legacy.plugin.ActiveImagePlusPreprocessor', priority=10000.0, enabled=true, pluginType=Prepr ocessorPlugin [DEBUG] - class='org.scijava.display.ActiveDisplayPreprocessor', priority=10000.0, enabled=true, pluginType=Preprocessor Plugin [DEBUG] - class='org.scijava.module.process.GatewayPreprocessor', priority=10000.0, enabled=true, pluginType=Preprocesso rPlugin [DEBUG] - class='org.scijava.module.process.ServicePreprocessor', priority=10000.0, enabled=true, pluginType=Preprocesso rPlugin [DEBUG] - class='org.scijava.ui.UIPreprocessor', priority=10000.0, enabled=true, pluginType=PreprocessorPlugin [DEBUG] - class='io.scif.bf.BioFormatsFormat', name='Bio-Formats Compatibility Format', priority=10000.0, enabled=true, pluginType=Format [DEBUG] - class='net.imagej.ops.convolve.ConvolveFFTImg', name='convolve', priority=10000.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.slicer.SlicewiseRAI2RAI', name='slicewise', priority=10000.0, enabled=true, pluginType=O p [DEBUG] - class='net.imagej.ops.arithmetic.add.parallel.AddConstantToArrayDoubleImageP', name='math.add', priority=111.0 , enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.arithmetic.add.parallel.AddConstantToArrayByteImageP', name='math.add', priority=110.0, enabled=true, pluginType=Op [DEBUG] - class='io.scif.bf.ome.BioFormatsTranslator$BioFormatsOMETranslator', priority=101.0, enabled=true, pluginType= ToOMETranslator [DEBUG] - class='io.scif.ome.translators.OMETIFFTranslator$OMETIFFtoOMETranslator', priority=101.0, enabled=true, plugin Type=FromOMETranslator [DEBUG] - class='io.scif.ome.translators.OMETIFFTranslator$OMEtoOMETIFFTranslator', priority=101.0, enabled=true, plugin Type=ToOMETranslator [DEBUG] - class='net.imagej.app.ToplevelImageJApp', name='ImageJ', priority=101.0, enabled=true, pluginType=App [DEBUG] - class='net.imagej.ops.arithmetic.add.AddConstantToArrayDoubleImage', name='math.add', priority=101.0, enabled= true, pluginType=Op [DEBUG] - class='io.scif.ome.translators.APNGTranslator$APNGOMETranslator', priority=100.0, enabled=true, pluginType=ToO METranslator [DEBUG] - class='io.scif.ome.translators.APNGTranslator$OMEAPNGTranslator', priority=100.0, enabled=true, pluginType=Fro mOMETranslator [DEBUG] - class='io.scif.ome.translators.BMPTranslator$BMPOMETranslator', priority=100.0, enabled=true, pluginType=ToOME Translator [DEBUG] - class='io.scif.ome.translators.DICOMTranslator$DICOMOMETranslator', priority=100.0, enabled=true, pluginType=T oOMETranslator [DEBUG] - class='io.scif.ome.translators.EPSTranslator$OMEEPSTranslator', priority=100.0, enabled=true, pluginType=FromO METranslator [DEBUG] - class='io.scif.ome.translators.ICSTranslator$ICSOMETranslator', priority=100.0, enabled=true, pluginType=ToOME Translator [DEBUG] - class='io.scif.ome.translators.ICSTranslator$OMEICSTranslator', priority=100.0, enabled=true, pluginType=FromO METranslator [DEBUG] - class='io.scif.ome.translators.MicromanagerTranslator$MicromanagerOMETranslator', priority=100.0, enabled=true , pluginType=FromOMETranslator [DEBUG] - class='io.scif.ome.translators.NRRDTranslator$NRRDOMETranslator', priority=100.0, enabled=true, pluginType=ToO METranslator [DEBUG] - class='io.scif.ome.translators.OBFTranslator$OBFOMETranslator', priority=100.0, enabled=true, pluginType=ToOME Translator [DEBUG] - class='io.scif.ome.translators.TIFFTranslator$OMETIFFTranslator', priority=100.0, enabled=true, pluginType=Fro mOMETranslator [DEBUG] - class='io.scif.ome.translators.TIFFTranslator$TIFFOMETranslator', priority=100.0, enabled=true, pluginType=ToO METranslator [DEBUG] - class='net.imagej.legacy.display.LegacyImageDisplayService', priority=100.0, enabled=true, pluginType=Service [DEBUG] - class='net.imagej.legacy.display.LegacyImageDisplayViewer', priority=100.0, enabled=true, pluginType=DisplayVi ewer [DEBUG] - class='net.imagej.lut.DefaultLUTService', priority=100.0, enabled=true, pluginType=Service [DEBUG] - class='net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter', priority=100.0, enabled=true, pluginType=JHotDra wAdapter [DEBUG] - class='net.imagej.ui.swing.overlay.ThresholdJHotDrawAdapter', priority=100.0, enabled=true, pluginType=JHotDra wAdapter [DEBUG] - class='org.scijava.module.process.InitPreprocessor', priority=100.0, enabled=true, pluginType=PreprocessorPlug in [DEBUG] - class='org.scijava.script.DefaultScriptService', priority=100.0, enabled=true, pluginType=Service [DEBUG] - class='org.scijava.ui.awt.widget.AWTMessageWidget', priority=100.0, enabled=true, pluginType=InputWidget [DEBUG] - class='org.scijava.ui.swing.widget.SwingMessageWidget', priority=100.0, enabled=true, pluginType=InputWidget [DEBUG] - class='net.imagej.operator.OpAdd', name='Add', priority=100.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.app.ImageJApp', name='ImageJ', priority=100.0, enabled=true, pluginType=App [DEBUG] - class='net.imagej.ui.swing.tools.SwingRectangleTool', name='Rectangle', description='Rectangular overlays', ic onPath='/icons/tools/rectangle.png', priority=100.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.ops.convolve.ConvolveFFTRAI', name='convolve', priority=100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.deconvolve.RichardsonLucyRAI', name='deconvolve', priority=100.0, enabled=true, pluginTy pe=Op [DEBUG] - class='net.imagej.ops.deconvolve.RichardsonLucyImg', name='deconvolve', priority=100.0, enabled=true, pluginTy pe=Op [DEBUG] - class='net.imagej.ops.fft.image.FFTImg', name='fft', priority=100.0, enabled=true, pluginType=FFT [DEBUG] - class='net.imagej.ops.fft.methods.FFTRAI', name='fft', priority=100.0, enabled=true, pluginType=FFT [DEBUG] - class='net.imagej.ops.convolve.kernel.create.CreateSymmetricGaussianKernel', name='gausskernel', priority=100. 0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.fft.image.IFFTImg', name='ifft', priority=100.0, enabled=true, pluginType=IFFT [DEBUG] - class='net.imagej.legacy.ui.LegacyUI', name='legacy', priority=100.0, enabled=true, pluginType=UserInterface [DEBUG] - class='net.imagej.ops.convolve.kernel.create.CreateSymmetricLogKernel', name='logkernel', priority=100.0, enab led=true, pluginType=Op [DEBUG] - class='net.imagej.ops.arithmetic.add.AddConstantToArrayByteImage', name='math.add', priority=100.0, enabled=tr ue, pluginType=Op [DEBUG] - class='net.imagej.ops.onthefly.ArithmeticOp$AddOp', name='math.add', priority=100.0, enabled=true, pluginType= Op [DEBUG] - class='net.imagej.ops.onthefly.ArithmeticOp$DivideOp', name='math.divide', priority=100.0, enabled=true, plugi nType=Op [DEBUG] - class='net.imagej.ops.onthefly.ArithmeticOp$MultiplyOp', name='math.multiply', priority=100.0, enabled=true, p luginType=Op [DEBUG] - class='net.imagej.ops.onthefly.ArithmeticOp$SubtractOp', name='math.subtract', priority=100.0, enabled=true, p luginType=Op [DEBUG] - class='net.imagej.ops.threshold.global.image.ApplyConstantThreshold', name='threshold', priority=100.0, enable d=true, pluginType=Op [DEBUG] - class='net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter', priority=99.0, enabled=true, pluginType=JHotDrawAd apter [DEBUG] - class='net.imagej.ui.swing.tools.SwingEllipseTool', name='Oval', description='Oval selections', iconPath='/ico ns/tools/oval.png', priority=99.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.operator.OpSubtract', name='Subtract', priority=99.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter', priority=98.5, enabled=true, pluginType=JHotDr awAdapter [DEBUG] - class='net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter', priority=98.0, enabled=true, pluginType=JHotDrawAd apter [DEBUG] - class='net.imagej.operator.OpMultiply', name='Multiply', priority=98.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.ui.swing.tools.SwingPolygonTool', name='Polygon', description='Polygon overlays', iconPath=' /icons/tools/polygon.png', priority=98.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.ui.swing.overlay.LineJHotDrawAdapter', priority=97.0, enabled=true, pluginType=JHotDrawAdapt er [DEBUG] - class='net.imagej.operator.OpDivide', name='Divide', priority=97.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.ui.swing.tools.SwingLineTool', name='Line', description='Straight line overlays', iconPath=' /icons/tools/line.png', priority=97.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter', priority=96.0, enabled=true, pluginType=JHotDrawA dapter [DEBUG] - class='net.imagej.operator.OpAnd', name='AND', priority=96.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.ui.swing.tools.SwingPolylineTool', name='Polyline', description='Polyline overlays', iconPat h='/icons/tools/polyline.png', priority=96.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.ui.swing.overlay.AngleJHotDrawAdapter', priority=95.0, enabled=true, pluginType=JHotDrawAdap ter [DEBUG] - class='net.imagej.ui.swing.tools.SwingAngleTool', name='Angle', description='Angle overlays', iconPath='/icons /tools/angle.png', priority=95.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.operator.OpOr', name='OR', priority=95.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.ui.swing.overlay.PointJHotDrawOverlay', priority=94.0, enabled=true, pluginType=JHotDrawAdap ter [DEBUG] - class='net.imagej.ui.swing.tools.SwingPointTool', name='Point', description='Point overlays', iconPath='/icons /tools/point.png', priority=94.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.operator.OpXor', name='XOR', priority=94.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.operator.OpMin', name='Min', priority=93.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.operator.OpMax', name='Max', priority=92.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.operator.OpAverage', name='Average', priority=91.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.operator.OpDifference', name='Difference', priority=90.0, enabled=true, pluginType=Calculato rOp [DEBUG] - class='net.imagej.operator.OpCopy', name='Copy', priority=89.0, enabled=true, pluginType=CalculatorOp [DEBUG] - class='net.imagej.operator.OpTransparentZero', name='Transparent-zero', priority=88.0, enabled=true, pluginTyp e=CalculatorOp [DEBUG] - class='fiji.plugin.trackmate.tracking.oldlap.FastLAPTrackerFactory', priority=10.0, enabled=true, pluginType=S potTrackerFactory [DEBUG] - class='fiji.plugin.trackmate.tracking.oldlap.SimpleFastLAPTrackerFactory', priority=10.0, enabled=true, plugin Type=SpotTrackerFactory [DEBUG] - class='fiji.plugin.trackmate.features.spot.SpotContrastAndSNRAnalyzerFactory', priority=1.0, enabled=true, plu ginType=SpotAnalyzerFactory [DEBUG] - class='fiji.plugin.trackmate.tracking.kdtree.NearestNeighborTrackerFactory', priority=1.0, enabled=true, plugi nType=SpotTrackerFactory [DEBUG] - class='fiji.plugin.trackmate.visualization.threedviewer.SpotDisplayer3DFactory', priority=1.0, enabled=true, p luginType=ViewFactory [DEBUG] - class='io.scif.services.SCIFIODatasetService', priority=1.0, enabled=true, pluginType=Service [DEBUG] - class='net.imagej.legacy.DefaultLegacyService', priority=1.0, enabled=true, pluginType=Service [DEBUG] - class='net.imagej.ops.onthefly.JavassistOptimizer', priority=1.0, enabled=true, pluginType=Optimizer [DEBUG] - class='org.scijava.ui.swing.widget.SwingChoiceRadioWidget', priority=1.0, enabled=true, pluginType=InputWidget [DEBUG] - class='net.imagej.ops.invert.InvertII', name='invert', priority=1.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$IntegerAbs', name='math.abs', priority=0.4, enabled=true, pluginType= Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$IntegerAdd', name='math.add', aliases='math.sum', priority=0.4, enabl ed=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$IntegerAnd', name='math.and', priority=0.4, enabled=true, pluginType= Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$IntegerDivide', name='math.divide', aliases='math.div, math.quotient' , priority=0.4, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$IntegerLeftShift', name='math.leftshift', aliases='math.lshift', prio rity=0.4, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$IntegerMaxConstant', name='math.maxconstant', priority=0.4, enabled=t rue, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$IntegerMinConstant', name='math.minconstant', priority=0.4, enabled=t rue, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$IntegerMultiply', name='math.multiply', aliases='math.mul, math.produ ct', priority=0.4, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$IntegerNegate', name='math.negate', priority=0.4, enabled=true, plugi nType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$IntegerOr', name='math.or', priority=0.4, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$IntegerRemainder', name='math.remainder', aliases='math.modulus, math .mod', priority=0.4, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$IntegerRightShift', name='math.rightshift', aliases='math.rshift', pr iority=0.4, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$IntegerSubtract', name='math.subtract', aliases='math.sub, math.diff, math.difference', priority=0.4, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$IntegerUnsignedRightShift', name='math.unsignedrightshift', aliases=' math.urshift', priority=0.4, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$IntegerXor', name='math.xor', priority=0.4, enabled=true, pluginType= Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$LongAbs', name='math.abs', priority=0.3, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$LongAdd', name='math.add', aliases='math.sum', priority=0.3, enabled= true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$LongAnd', name='math.and', priority=0.3, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$LongDivide', name='math.divide', aliases='math.div, math.quotient', p riority=0.3, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$LongLeftShift', name='math.leftshift', aliases='math.lshift', priorit y=0.3, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$LongMaxConstant', name='math.maxconstant', priority=0.3, enabled=true , pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$LongMinConstant', name='math.minconstant', priority=0.3, enabled=true , pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$LongMultiply', name='math.multiply', aliases='math.mul, math.product' , priority=0.3, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$LongNegate', name='math.negate', priority=0.3, enabled=true, pluginTy pe=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$LongOr', name='math.or', priority=0.3, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$LongRemainder', name='math.remainder', aliases='math.modulus, math.mo d', priority=0.3, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$LongRightShift', name='math.rightshift', aliases='math.rshift', prior ity=0.3, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$LongSubtract', name='math.subtract', aliases='math.sub, math.diff, ma th.difference', priority=0.3, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$LongUnsignedRightShift', name='math.unsignedrightshift', aliases='mat h.urshift', priority=0.3, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$LongXor', name='math.xor', priority=0.3, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$FloatAbs', name='math.abs', priority=0.2, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$FloatAdd', name='math.add', aliases='math.sum', priority=0.2, enabled =true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$FloatDivide', name='math.divide', aliases='math.div, math.quotient', priority=0.2, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$FloatMaxConstant', name='math.maxconstant', priority=0.2, enabled=tru e, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$FloatMinConstant', name='math.minconstant', priority=0.2, enabled=tru e, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$FloatMultiply', name='math.multiply', aliases='math.mul, math.product ', priority=0.2, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$FloatNegate', name='math.negate', priority=0.2, enabled=true, pluginT ype=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$FloatRemainder', name='math.remainder', aliases='math.modulus, math.m od', priority=0.2, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$FloatRound', name='math.round', priority=0.2, enabled=true, pluginTyp e=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$FloatSignum', name='math.signum', priority=0.2, enabled=true, pluginT ype=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$FloatSubtract', name='math.subtract', aliases='math.sub, math.diff, m ath.difference', priority=0.2, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoubleAbs', name='math.abs', priority=0.1, enabled=true, pluginType=O p [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoubleAdd', name='math.add', aliases='math.sum', priority=0.1, enable d=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoubleArccos', name='math.arccos', priority=0.1, enabled=true, plugin Type=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoubleArcsin', name='math.arcsin', priority=0.1, enabled=true, plugin Type=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoubleArctan', name='math.arctan', priority=0.1, enabled=true, plugin Type=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoubleCeil', name='math.ceil', priority=0.1, enabled=true, pluginType =Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoubleCos', name='math.cos', priority=0.1, enabled=true, pluginType=O p [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoubleCosh', name='math.cosh', priority=0.1, enabled=true, pluginType =Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoubleCubeRoot', name='math.cuberoot', priority=0.1, enabled=true, pl uginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoubleDivide', name='math.divide', aliases='math.div, math.quotient', priority=0.1, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoubleExp', name='math.exp', priority=0.1, enabled=true, pluginType=O p [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoubleFloor', name='math.floor', priority=0.1, enabled=true, pluginTy pe=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoubleLog', name='math.log', priority=0.1, enabled=true, pluginType=O p [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoubleLog10', name='math.log10', priority=0.1, enabled=true, pluginTy pe=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoubleLogOnePlusX', name='math.logoneplusx', priority=0.1, enabled=tr ue, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoubleMaxConstant', name='math.maxconstant', priority=0.1, enabled=tr ue, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoubleMinConstant', name='math.minconstant', priority=0.1, enabled=tr ue, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoubleMultiply', name='math.multiply', aliases='math.mul, math.produc t', priority=0.1, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoubleNegate', name='math.negate', priority=0.1, enabled=true, plugin Type=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoublePowerConstant', name='math.powerconstant', priority=0.1, enable d=true, pluginType=Op [DEBUG] - class='net.imagej.ops.math.PrimitiveMath$DoubleRemainder', name='math.remainder', aliases='math.modulus, math. mod', priority=0.1, enabled=true, pluginType=Op [DEBUG] - 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class='net.imagej.plugins.commands.display.CaptureScreen', menu='Plugins > Utilities > Capture Screen', priori ty=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.typechange.TypeChanger', menu='Image > Type > Change...', priority=0.0, ena bled=true, pluginType=Command [DEBUG] - class='net.imagej.plugins.commands.display.ChannelsTool', menu='Image > Color > Channels Tool...', iconPath='/ icons/commands/color_wheel.png', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='net.imagej.options.OptionsChannels', menu='Edit > Options > Channels...', priority=0.0, enabled=true, p luginType=OptionsPlugin [DEBUG] - class='org.scijava.plugins.commands.io.ClearRecent', label='Clear Recent', menu='File > Open Recent > Clear Li st', priority=0.0, enabled=true, pluginType=Command [DEBUG] - class='org.scijava.plugins.commands.display.Close', menu='File > Close', priority=0.0, enabled=true, pluginTyp e=Command [DEBUG] - class='net.imagej.plugins.commands.binary.CloseBinaryImage', menu='Process > Binary > Close', priority=0.0, en abled=true, pluginType=Command [DEBUG] - 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class='org.scijava.ui.dnd.FileDragAndDropHandler', priority=-100.0, enabled=true, pluginType=DragAndDropHandle r [DEBUG] - class='io.scif.formats.qt.LegacyQTFormat', name='QuickTime', priority=-100.0, enabled=true, pluginType=Format [DEBUG] - class='org.scijava.app.SciJavaApp', name='SciJava', priority=-100.0, enabled=true, pluginType=App [DEBUG] - class='io.scif.formats.JPEGTileFormat', name='Tile JPEG', priority=-100.0, enabled=true, pluginType=Format [DEBUG] - class='org.scijava.ui.awt.AWTUI', name='awt', priority=-100.0, enabled=true, pluginType=UserInterface [DEBUG] - class='net.imagej.ops.crop.CropRAI', name='crop', aliases='slice', priority=-100.0, enabled=true, pluginType=O p [DEBUG] - class='net.imagej.ops.map.MapII2RAI', name='map', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.map.MapRAI2III', name='map', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.map.MapI', name='map', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.neighborhood.MapNeighborhood', name='map', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.arithmetic.add.AddConstantToNumericType', name='math.add', priority=-100.0, enabled=true , pluginType=Op [DEBUG] - class='net.imagej.ops.statistics.MaxRealType', name='max', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.statistics.MeanRealType', name='mean', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.statistics.MedianRealType', name='median', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.statistics.MinRealType', name='min', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.project.ProjectRAI2II', name='project', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.misc.SizeIterableInterval', name='size', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.statistics.StdDevRealType', name='stddev', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.ops.statistics.SumRealType', name='sum', priority=-100.0, enabled=true, pluginType=Op [DEBUG] - class='org.scijava.ui.swing.mdi.SwingMdiUI', name='swing-mdi', priority=-100.0, enabled=true, pluginType=UserI nterface [DEBUG] - class='net.imagej.ops.statistics.VarianceRealType', name='variance', priority=-100.0, enabled=true, pluginType =Op [DEBUG] - class='org.scijava.text.io.TextIOPlugin', priority=-101.0, enabled=true, pluginType=IOPlugin [DEBUG] - class='net.imagej.ops.map.MapI2I', name='map', priority=-101.0, enabled=true, pluginType=Op [DEBUG] - class='net.imagej.plugins.tools.WandTool', name='Wand', description='Wand (tracing) tool', iconPath='/icons/to ols/wand.png', priority=-110.0, enabled=false, pluginType=Tool [DEBUG] - class='net.imagej.ui.swing.tools.SwingTextTool', name='Text', description='Text tool', iconPath='/icons/tools/ text.png', priority=-115.0, enabled=false, pluginType=Tool [DEBUG] - class='net.imagej.plugins.tools.ZoomTool', name='Zoom', description='Magnifying glass (or use "+" and "-" keys )', iconPath='/icons/tools/zoom.png', priority=-200.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.plugins.tools.PanTool', name='Pan', description='Scrolling tool (or press space bar and drag )', iconPath='/icons/tools/pan.png', priority=-201.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.plugins.tools.PaintBrushTool', name='Paintbrush', description='Paintbrush Tool', iconPath='/ icons/tools/paintbrush.png', priority=-300.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.plugins.tools.PencilTool', name='Pencil', description='Pencil Tool', iconPath='/icons/tools/ pencil.png', priority=-301.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.plugins.tools.SprayCanTool', name='SprayCan', label='Spray Can', description='Spray Can Tool ', iconPath='/icons/tools/spray-can.png', priority=-303.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.plugins.tools.FloodFillTool', name='FloodFill', label='Flood Fill', description='Flood Fill Tool', iconPath='/icons/tools/flood-fill.png', priority=-304.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.plugins.tools.ArrowTool', name='Arrow', description='Arrow Tool', iconPath='/icons/tools/arr ow.png', priority=-305.0, enabled=false, pluginType=Tool [DEBUG] - class='net.imagej.plugins.tools.FgColorTool', name='Foreground', iconPath='/icons/tools/blank.png', priority=- 500.0, enabled=true, pluginType=Tool [DEBUG] - class='net.imagej.plugins.tools.BgColorTool', name='Background', iconPath='/icons/tools/blankBlack.png', prior ity=-501.0, enabled=true, pluginType=Tool [DEBUG] - class='io.scif.ome.formats.OMETIFFFormat', priority=-9998.0, enabled=true, pluginType=Format [DEBUG] - class='io.scif.ome.formats.OMETIFFFormat$OMETIFFTranslator', priority=-9998.0, enabled=true, pluginType=Transl ator [DEBUG] - class='io.scif.formats.TIFFFormat$TIFFTranslator', priority=-9999.0, enabled=true, pluginType=Translator [DEBUG] - class='org.scijava.module.process.LoadInputsPreprocessor', priority=-9999.0, enabled=true, pluginType=Preproce ssorPlugin [DEBUG] - class='io.scif.formats.TIFFFormat', name='Tagged Image File Format', priority=-9999.0, enabled=true, pluginTyp e=Format [DEBUG] - class='org.scijava.ui.FilePreprocessor', priority=-9999.5, enabled=true, pluginType=PreprocessorPlugin [DEBUG] - class='io.scif.DefaultTranslator', priority=-10000.0, enabled=true, pluginType=Translator [DEBUG] - class='net.imagej.legacy.ui.LegacyInputHarvester', priority=-10000.0, enabled=true, pluginType=PreprocessorPlu gin [DEBUG] - class='net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter', priority=-10000.0, enabled=true, pluginType=JHotDr awAdapter [DEBUG] - class='org.scijava.display.DisplayPostprocessor', priority=-10000.0, enabled=true, pluginType=PostprocessorPlu gin [DEBUG] - class='org.scijava.plugins.text.plain.PlainTextFormat', priority=-10000.0, enabled=true, pluginType=TextFormat [DEBUG] - class='org.scijava.ui.awt.widget.AWTInputHarvester', priority=-10000.0, enabled=true, pluginType=PreprocessorP lugin [DEBUG] - class='org.scijava.ui.swing.widget.SwingInputHarvester', priority=-10000.0, enabled=true, pluginType=Preproces sorPlugin [DEBUG] - class='org.scijava.ui.swing.widget.SwingMdiInputHarvester', priority=-10000.0, enabled=true, pluginType=Prepro cessorPlugin [DEBUG] - class='org.scijava.platform.DefaultPlatform', name='Default', priority=-10000.0, enabled=true, pluginType=Plat form [DEBUG] - class='net.imagej.plugins.tools.AcceleratorHandler', name='Keyboard Shortcuts', priority=-10000.0, enabled=tru e, pluginType=Tool [DEBUG] - class='io.scif.formats.MinimalTIFFFormat', name='Minimal TIFF', priority=-10000.0, enabled=true, pluginType=Fo rmat [DEBUG] - class='net.imagej.ops.chunker.InterleavedChunker', name='chunker', priority=-10000.0, enabled=true, pluginType =Op [DEBUG] - class='net.imagej.ops.arithmetic.add.AddConstantToImageFunctional', name='math.add', priority=-10000.0, enable d=true, pluginType=Op [DEBUG] - class='org.scijava.module.process.CheckInputsPreprocessor', priority=-10001.0, enabled=true, pluginType=Prepro cessorPlugin [DEBUG] - class='org.scijava.module.process.SaveInputsPreprocessor', priority=-10001.0, enabled=true, pluginType=Preproc essorPlugin [DEBUG] - class='io.scif.formats.TIFFJAIFormat', name='Tagged Image File Format', priority=-10001.0, enabled=true, plugi nType=Format [DEBUG] - class='net.imagej.ops.misc.SizeIterable', name='size', priority=-Infinity, enabled=true, pluginType=Op [DEBUG] Created service 'org.scijava.plugin.DefaultPluginService' in 797 ms [DEBUG] Creating service: org.scijava.object.DefaultObjectService [DEBUG] Created service 'org.scijava.object.DefaultObjectService' in 15 ms [DEBUG] Creating service: org.scijava.prefs.DefaultPrefService [DEBUG] Created service 'org.scijava.prefs.DefaultPrefService' in 0 ms [DEBUG] Creating service: org.scijava.convert.DefaultConvertService [DEBUG] Created service 'org.scijava.convert.DefaultConvertService' in 0 ms [DEBUG] Created service 'org.scijava.module.DefaultModuleService' in 827 ms [DEBUG] Creating service: io.scif.services.SCIFIODatasetService [DEBUG] Created service 'io.scif.services.SCIFIODatasetService' in 16 ms [DEBUG] Creating service: org.scijava.display.DefaultDisplayService [DEBUG] Created service 'org.scijava.display.DefaultDisplayService' in 0 ms [DEBUG] Created service 'net.imagej.lut.DefaultLUTService' in 843 ms [DEBUG] Creating service: org.scijava.script.DefaultScriptService [DEBUG] Creating service: org.scijava.command.DefaultCommandService [DEBUG] Created service 'org.scijava.command.DefaultCommandService' in 31 ms [DEBUG] Created service 'org.scijava.script.DefaultScriptService' in 31 ms [DEBUG] Creating service: net.imagej.legacy.DefaultLegacyService java.lang.IllegalArgumentException: Could not handle HTTPS in public boolean install(java.lang.String path) in ij.plugin .PluginInstaller at net.imagej.patcher.CodeHacker.handleHTTPS(CodeHacker.java:1221) at net.imagej.patcher.LegacyExtensions.injectHooks(LegacyExtensions.java:286) at net.imagej.patcher.LegacyInjector.inject(LegacyInjector.java:308) at net.imagej.patcher.LegacyInjector.injectHooks(LegacyInjector.java:109) at net.imagej.patcher.LegacyEnvironment.initialize(LegacyEnvironment.java:101) at net.imagej.patcher.LegacyEnvironment.applyPatches(LegacyEnvironment.java:495) at net.imagej.patcher.LegacyInjector.preinit(LegacyInjector.java:397) at net.imagej.patcher.LegacyInjector.preinit(LegacyInjector.java:376) at net.imagej.legacy.DefaultLegacyService.(DefaultLegacyService.java:124) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) at java.lang.reflect.Constructor.newInstance(Constructor.java:513) at java.lang.Class.newInstance0(Class.java:355) at java.lang.Class.newInstance(Class.java:308) at org.scijava.service.ServiceHelper.createServiceRecursively(ServiceHelper.java:302) at org.scijava.service.ServiceHelper.createExactService(ServiceHelper.java:269) at org.scijava.service.ServiceHelper.loadService(ServiceHelper.java:231) at org.scijava.service.ServiceHelper.loadService(ServiceHelper.java:194) at org.scijava.service.ServiceHelper.loadServices(ServiceHelper.java:166) at org.scijava.Context.(Context.java:267) at org.scijava.Context.(Context.java:224) at org.scijava.Context.(Context.java:163) at org.scijava.Context.(Context.java:119) at org.scijava.Context.(Context.java:107) at net.imagej.ImageJ.(ImageJ.java:82) at net.imagej.Main.launch(Main.java:61) at net.imagej.Main.main(Main.java:73) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at net.imagej.launcher.ClassLauncher.launch(ClassLauncher.java:258) at net.imagej.launcher.ClassLauncher.run(ClassLauncher.java:184) at net.imagej.launcher.ClassLauncher.main(ClassLauncher.java:76) [DEBUG] Creating service: net.imagej.display.DefaultOverlayService [DEBUG] Creating service: org.scijava.options.DefaultOptionsService [DEBUG] Created service 'org.scijava.options.DefaultOptionsService' in 0 ms [DEBUG] Creating service: net.imagej.ui.awt.AWTRenderingService [DEBUG] Created service 'net.imagej.ui.awt.AWTRenderingService' in 0 ms [DEBUG] Created service 'net.imagej.display.DefaultOverlayService' in 15 ms [DEBUG] Creating service: net.imagej.threshold.DefaultThresholdService [DEBUG] Created service 'net.imagej.threshold.DefaultThresholdService' in 16 ms [DEBUG] Creating service: org.scijava.menu.DefaultMenuService [DEBUG] Created service 'org.scijava.menu.DefaultMenuService' in 0 ms [DEBUG] Creating service: org.scijava.app.DefaultStatusService [DEBUG] Creating service: org.scijava.app.DefaultAppService [DEBUG] Created service 'org.scijava.app.DefaultAppService' in 0 ms [DEBUG] Created service 'org.scijava.app.DefaultStatusService' in 16 ms [DEBUG] Found 8 ScriptLanguage plugins. [DEBUG] Found 41 scripts [INFO] Overriding AccPbFRET Plugin; identifier: script:C:\Users\Public\DOCUME~1\Fiji\plugins\AccPbFRET_Plugin.java; jar: file:/C:/Users/Public/DOCUME~1/Fiji/jars/scijava-common-2.38.2.jar [INFO] Overriding BIOP VSI Reader; identifier: script:C:\Users\Public\DOCUME~1\Fiji\plugins\ActionBar\Shared Bars\BIOP_V SI_Reader.ijm; jar: file:/C:/Users/Public/DOCUME~1/Fiji/jars/scijava-common-2.38.2.jar [INFO] Overriding Common Tools; identifier: script:C:\Users\Public\DOCUME~1\Fiji\plugins\ActionBar\Shared Bars\Common_To ols.ijm; jar: file:/C:/Users/Public/DOCUME~1/Fiji/jars/scijava-common-2.38.2.jar [INFO] Overriding Align Slice; identifier: script:C:\Users\Public\DOCUME~1\Fiji\plugins\Align_Slice.java; jar: file:/C:/ Users/Public/DOCUME~1/Fiji/jars/scijava-common-2.38.2.jar [INFO] Overriding Apply Formula; identifier: script:C:\Users\Public\DOCUME~1\Fiji\plugins\Apply_Formula.java; jar: file: /C:/Users/Public/DOCUME~1/Fiji/jars/scijava-common-2.38.2.jar [INFO] Overriding Distribution Plotter; identifier: script:C:\Users\Public\DOCUME~1\Fiji\plugins\Distribution_Plotter.ij m; jar: file:/C:/Users/Public/DOCUME~1/Fiji/jars/scijava-common-2.38.2.jar [INFO] Overriding Example Plots; identifier: script:C:\Users\Public\DOCUME~1\Fiji\plugins\Example_Plots.java; jar: file: /C:/Users/Public/DOCUME~1/Fiji/jars/scijava-common-2.38.2.jar [INFO] Overriding FRETcalc ; identifier: script:C:\Users\Public\DOCUME~1\Fiji\plugins\FRETcalc_.java; jar: file:/C:/User s/Public/DOCUME~1/Fiji/jars/scijava-common-2.38.2.jar [INFO] Overriding High pass; identifier: script:C:\Users\Public\DOCUME~1\Fiji\plugins\High_pass.java; jar: file:/C:/User s/Public/DOCUME~1/Fiji/jars/scijava-common-2.38.2.jar [INFO] Overriding ROI Color Coder; identifier: script:C:\Users\Public\DOCUME~1\Fiji\plugins\ROI_Color_Coder.ijm; jar: fi le:/C:/Users/Public/DOCUME~1/Fiji/jars/scijava-common-2.38.2.jar [INFO] Overriding Ratio Plus; identifier: script:C:\Users\Public\DOCUME~1\Fiji\plugins\Ratio_Plus.java; jar: file:/C:/Us ers/Public/DOCUME~1/Fiji/jars/scijava-common-2.38.2.jar [INFO] Overriding RiFRET Plugin; identifier: script:C:\Users\Public\DOCUME~1\Fiji\plugins\RiFRET_Plugin.java; jar: file: /C:/Users/Public/DOCUME~1/Fiji/jars/scijava-common-2.38.2.jar [INFO] Overriding Specify ROI Interactively; identifier: script:C:\Users\Public\DOCUME~1\Fiji\plugins\Specify_ROI_Intera ctively.java; jar: file:/C:/Users/Public/DOCUME~1/Fiji/jars/scijava-common-2.38.2.jar [INFO] Overriding Watch Dir; identifier: script:C:\Users\Public\DOCUME~1\Fiji\plugins\Watch_Dir.java; jar: file:/C:/User s/Public/DOCUME~1/Fiji/jars/scijava-common-2.38.2.jar [INFO] Overriding ZAxis Profiler; identifier: script:C:\Users\Public\DOCUME~1\Fiji\plugins\ZAxis_Profiler.java; jar: fil e:/C:/Users/Public/DOCUME~1/Fiji/jars/scijava-common-2.38.2.jar [INFO] Overriding Save Image As Tiff Without Prompt; identifier: script:C:\Users\Public\DOCUME~1\Fiji\plugins\ZenIntegra tion\Save_Image_As_Tiff_Without_Prompt.java; jar: file:/C:/Users/Public/DOCUME~1/Fiji/jars/scijava-common-2.38.2.jar [INFO] Overriding Edit LUT As Text; identifier: script:C:\Users\Public\DOCUME~1\Fiji\scripts\Python_Scripts\Edit_LUT_As_ Text.py; jar: file:/C:/Users/Public/DOCUME~1/Fiji/jars/scijava-common-2.38.2.jar [INFO] Overriding Find Dimension of Raw Image; identifier: script:C:\Users\Public\DOCUME~1\Fiji\scripts\Python_Scripts\F ind_Dimension_of_Raw_Image.py; jar: file:/C:/Users/Public/DOCUME~1/Fiji/jars/scijava-common-2.38.2.jar [DEBUG] Created service 'net.imagej.legacy.DefaultLegacyService' in 2730 ms [DEBUG] Creating service: fiji.DefaultFijiService [DEBUG] Created service 'fiji.DefaultFijiService' in 0 ms [DEBUG] Creating service: io.scif.DefaultMetadataService [DEBUG] Created service 'io.scif.DefaultMetadataService' in 0 ms [DEBUG] Creating service: io.scif.codec.DefaultCodecService [DEBUG] Created service 'io.scif.codec.DefaultCodecService' in 0 ms [DEBUG] Creating service: io.scif.formats.qt.DefaultQTJavaService [DEBUG] Created service 'io.scif.formats.qt.DefaultQTJavaService' in 0 ms [DEBUG] Creating service: io.scif.formats.tiff.DefaultTiffService [DEBUG] Created service 'io.scif.formats.tiff.DefaultTiffService' in 0 ms [DEBUG] Creating service: io.scif.gui.DefaultGUIService [DEBUG] Created service 'io.scif.gui.DefaultGUIService' in 0 ms [DEBUG] Creating service: io.scif.img.DefaultImgUtilityService [DEBUG] Created service 'io.scif.img.DefaultImgUtilityService' in 16 ms [DEBUG] Creating service: io.scif.img.cell.cache.MapDBCache [DEBUG] Creating service: io.scif.refs.DefaultRefManagerService [DEBUG] Created service 'io.scif.refs.DefaultRefManagerService' in 0 ms [DEBUG] Created service 'io.scif.img.cell.cache.MapDBCache' in 15 ms [DEBUG] Creating service: io.scif.img.converters.DefaultPlaneConverterService [DEBUG] Created service 'io.scif.img.converters.DefaultPlaneConverterService' in 0 ms [DEBUG] Creating service: io.scif.io.DefaultNIOService [DEBUG] Created service 'io.scif.io.DefaultNIOService' in 0 ms [DEBUG] Creating service: io.scif.ome.services.DefaultOMEMetadataService [DEBUG] Creating service: io.scif.services.DefaultFormatService [DEBUG] Created service 'io.scif.services.DefaultFormatService' in 15 ms [DEBUG] Creating service: io.scif.ome.services.DefaultOMEXMLService [DEBUG] Created service 'io.scif.ome.services.DefaultOMEXMLService' in 32 ms [DEBUG] Created service 'io.scif.ome.services.DefaultOMEMetadataService' in 78 ms [DEBUG] Creating service: io.scif.services.DefaultDatasetIOService [DEBUG] Created service 'io.scif.services.DefaultDatasetIOService' in 0 ms [DEBUG] Creating service: io.scif.services.DefaultFilePatternService [DEBUG] Created service 'io.scif.services.DefaultFilePatternService' in 0 ms [DEBUG] Creating service: io.scif.services.DefaultLocationService [DEBUG] Created service 'io.scif.services.DefaultLocationService' in 0 ms [DEBUG] Creating service: io.scif.services.DefaultTranslatorService [DEBUG] Created service 'io.scif.services.DefaultTranslatorService' in 0 ms [DEBUG] Creating service: io.scif.services.JAIIIOServiceImpl [DEBUG] Created service 'io.scif.services.JAIIIOServiceImpl' in 32 ms [DEBUG] Creating service: io.scif.xml.DefaultXMLService [DEBUG] Created service 'io.scif.xml.DefaultXMLService' in 94 ms [DEBUG] Creating service: net.imagej.DefaultDatasetService [DEBUG] Creating service: net.imagej.types.DefaultDataTypeService [DEBUG] Found 11 DataType plugins. [DEBUG] Created service 'net.imagej.types.DefaultDataTypeService' in 62 ms [DEBUG] Created service 'net.imagej.DefaultDatasetService' in 93 ms [DEBUG] Creating service: net.imagej.DefaultImgPlusService [DEBUG] Created service 'net.imagej.DefaultImgPlusService' in 16 ms [DEBUG] Creating service: net.imagej.animation.DefaultAnimationService [DEBUG] Created service 'net.imagej.animation.DefaultAnimationService' in 16 ms [DEBUG] Creating service: net.imagej.autoscale.DefaultAutoscaleService [DEBUG] Created service 'net.imagej.autoscale.DefaultAutoscaleService' in 0 ms [DEBUG] Creating service: net.imagej.display.DefaultImageDisplayService [DEBUG] Created service 'net.imagej.display.DefaultImageDisplayService' in 0 ms [DEBUG] Creating service: net.imagej.display.DefaultWindowService [DEBUG] Created service 'net.imagej.display.DefaultWindowService' in 15 ms [DEBUG] Creating service: net.imagej.display.DefaultZoomService [DEBUG] Creating service: org.scijava.input.DefaultInputService [DEBUG] Created service 'org.scijava.input.DefaultInputService' in 0 ms [DEBUG] Created service 'net.imagej.display.DefaultZoomService' in 0 ms [DEBUG] Creating service: net.imagej.measure.DefaultMeasurementService [DEBUG] Created service 'net.imagej.measure.DefaultMeasurementService' in 16 ms [DEBUG] Creating service: net.imagej.measure.DefaultStatisticsService [DEBUG] Created service 'net.imagej.measure.DefaultStatisticsService' in 0 ms [DEBUG] Creating service: net.imagej.operator.DefaultCalculatorService [DEBUG] Created service 'net.imagej.operator.DefaultCalculatorService' in 0 ms [DEBUG] Creating service: net.imagej.ops.DefaultOpMatchingService [DEBUG] Created service 'net.imagej.ops.DefaultOpMatchingService' in 0 ms [DEBUG] Creating service: net.imagej.ops.DefaultOpService [DEBUG] Created service 'net.imagej.ops.DefaultOpService' in 0 ms [DEBUG] Creating service: net.imagej.plugins.commands.restructure.SplitChannelsContextMonitor [DEBUG] Created service 'net.imagej.plugins.commands.restructure.SplitChannelsContextMonitor' in 0 ms [DEBUG] Creating service: net.imagej.sampler.DefaultSamplerService [DEBUG] Created service 'net.imagej.sampler.DefaultSamplerService' in 0 ms [DEBUG] Creating service: net.imagej.ui.DefaultImageJUIService [DEBUG] Created service 'net.imagej.ui.DefaultImageJUIService' in 16 ms [DEBUG] Creating service: net.imagej.ui.awt.AWTScreenCaptureService [DEBUG] Created service 'net.imagej.ui.awt.AWTScreenCaptureService' in 0 ms [DEBUG] Creating service: net.imagej.ui.swing.overlay.JHotDrawService [DEBUG] Created service 'net.imagej.ui.swing.overlay.JHotDrawService' in 0 ms [DEBUG] Creating service: net.imagej.units.DefaultUnitService [DEBUG] Created service 'net.imagej.units.DefaultUnitService' in 31 ms [DEBUG] Creating service: net.imagej.updater.DefaultUpdateService [DEBUG] Created service 'net.imagej.updater.DefaultUpdateService' in 16 ms [DEBUG] Creating service: net.imagej.updater.DefaultUploaderService [DEBUG] Created service 'net.imagej.updater.DefaultUploaderService' in 0 ms [DEBUG] Creating service: net.imglib2.meta.units.DefaultUnitService [DEBUG] Created service 'net.imglib2.meta.units.DefaultUnitService' in 0 ms [DEBUG] Creating service: org.scijava.console.DefaultConsoleService [DEBUG] Created service 'org.scijava.console.DefaultConsoleService' in 0 ms [DEBUG] Creating service: org.scijava.event.DefaultEventHistory [DEBUG] Created service 'org.scijava.event.DefaultEventHistory' in 15 ms [DEBUG] Creating service: org.scijava.io.DefaultIOService [DEBUG] Created service 'org.scijava.io.DefaultIOService' in 0 ms [DEBUG] Creating service: org.scijava.io.DefaultRecentFileService [DEBUG] Created service 'org.scijava.io.DefaultRecentFileService' in 0 ms [DEBUG] Creating service: org.scijava.platform.DefaultPlatformService [DEBUG] Creating service: org.scijava.platform.DefaultAppEventService [DEBUG] Created service 'org.scijava.platform.DefaultAppEventService' in 0 ms [DEBUG] Found 2 Platform plugins. [DEBUG] Configuring platform: org.scijava.plugins.platforms.windows.WindowsPlatform [DEBUG] Configuring platform: org.scijava.platform.DefaultPlatform [DEBUG] Created service 'org.scijava.platform.DefaultPlatformService' in 16 ms [DEBUG] Creating service: org.scijava.plugins.scripting.java.DefaultJavaService SLF4J: The following set of substitute loggers may have been accessed SLF4J: during the initialization phase. Logging calls during this SLF4J: phase were not honored. However, subsequent logging calls to these [DEBUG] Created service 'org.scijava.plugins.scripting.java.DefaultJavaService' in 0 ms SLF4J: loggers will work as normally expected. [DEBUG] Creating service: org.scijava.script.DefaultScriptHeaderService SLF4J: See also http://www.slf4j.org/codes.html#substituteLogger [DEBUG] Created service 'org.scijava.script.DefaultScriptHeaderService' in 0 ms SLF4J: loci.formats.FormatHandler [DEBUG] Creating service: org.scijava.text.DefaultTextService [DEBUG] Created service 'org.scijava.text.DefaultTextService' in 0 ms [DEBUG] Creating service: org.scijava.tool.DefaultToolService [DEBUG] Created service 'org.scijava.tool.DefaultToolService' in 16 ms [DEBUG] Creating service: org.scijava.ui.DefaultUIService [DEBUG] Created service 'org.scijava.ui.DefaultUIService' in 0 ms [DEBUG] Creating service: org.scijava.ui.dnd.DefaultDragAndDropService [DEBUG] Created service 'org.scijava.ui.dnd.DefaultDragAndDropService' in 15 ms [DEBUG] Creating service: org.scijava.ui.swing.SwingIconService [DEBUG] Created service 'org.scijava.ui.swing.SwingIconService' in 0 ms [DEBUG] Creating service: org.scijava.welcome.DefaultWelcomeService [DEBUG] Created service 'org.scijava.welcome.DefaultWelcomeService' in 16 ms [DEBUG] Creating service: org.scijava.widget.DefaultWidgetService [DEBUG] Found 22 InputWidget plugins. [DEBUG] Created service 'org.scijava.widget.DefaultWidgetService' in 0 ms [DEBUG] Creating service: io.scif.services.DefaultInitializeService [DEBUG] Created service 'io.scif.services.DefaultInitializeService' in 0 ms [DEBUG] Creating service: net.imagej.display.DummyScreenCaptureService [DEBUG] Created service 'net.imagej.display.DummyScreenCaptureService' in 0 ms [DEBUG] Creating service: net.imagej.render.DummyRenderingService [DEBUG] Created service 'net.imagej.render.DummyRenderingService' in 0 ms [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false,null,null), called from non-EDT Thread:null [DEBUG] Received command line arguments: [DEBUG] Discovered user interface: net.imagej.legacy.ui.LegacyUI [DEBUG] Discovered user interface: org.scijava.ui.swing.sdi.SwingSDIUI [DEBUG] Discovered user interface: org.scijava.ui.awt.AWTUI [DEBUG] Discovered user interface: org.scijava.ui.swing.mdi.SwingMdiUI [DEBUG] Launching user interface: net.imagej.legacy.ui.LegacyUI [DEBUG] Found 20 OptionsPlugin plugins. [DEBUG] Found 4 Converter plugins. [DEBUG] Found 5 App plugins. [DEBUG] Found 17 ThresholdMethod plugins. [DEBUG] Found 16 Codec plugins. [DEBUG] Found 3 PlaneConverter plugins. [DEBUG] Found 30 Translator plugins. [DEBUG] Found 2 AutoscaleMethod plugins. [DEBUG] Found 13 CalculatorOp plugins. [DEBUG] Found 1 Optimizer plugins. [DEBUG] Found 11 ConsoleArgument plugins. [DEBUG] Found 4 IOPlugin plugins. [DEBUG] Found 3 JavaRunner plugins. [DEBUG] Found 1 ScriptHeader plugins. [DEBUG] Found 2 TextFormat plugins. [DEBUG] Found 26 Tool plugins. [DEBUG] Found 4 DragAndDropHandler plugins. [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false ui = legacy,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false progress = -1 maximum = -1 status = Running command: Up-to-date check warning = false,null,null), called from non-EDT Thread:null file:/C:/Users/Public/Documents/Fiji/java/win64/jdk1.6.0_24/jre/lib/rt.jar [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates,null,null), called from non-EDT Thread:null [DEBUG] Executing module: net.imagej.updater.CheckForUpdates@31d47845 [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.module.process.DebugPreprocessor@6422b8ff,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.module.process.ValidityPreprocessor@44efdd58,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates processor = net.imagej.display.ActiveImagePreprocessor@5facdfc3,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates processor = net.imagej.legacy.plugin.ActiveImagePlusPreprocessor@4e96ac47,null,null), called from non-EDT Thread :null [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.display.ActiveDisplayPreprocessor@60891a0,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.module.process.GatewayPreprocessor@1c90a278,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.module.process.ServicePreprocessor@5b9a82ee,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.ui.UIPreprocessor@7d0a063d,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.module.process.InitPreprocessor@1d1fceed,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.module.process.LoadInputsPreprocessor@134a388b,null,null), called from non-EDT Thread:nu ll [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.ui.FilePreprocessor@6dc63791,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates processor = net.imagej.legacy.ui.LegacyInputHarvester@706a48e4,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.ui.awt.widget.AWTInputHarvester@22fdffb1,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.ui.swing.widget.SwingInputHarvester@519dcf69,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.ui.swing.widget.SwingMdiInputHarvester@4f9c205b,null,null), called from non-EDT Thread:n ull [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.module.process.CheckInputsPreprocessor@13105f32,null,null), called from non-EDT Thread:n ull [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.module.process.SaveInputsPreprocessor@17d9d565,null,null), called from non-EDT Thread:nu ll [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates,null,null), called from non-EDT Thread:null [DEBUG] INPUTS: [DEBUG] OUTPUTS: [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.module.process.DebugPostprocessor@51d9d7ab,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates processor = org.scijava.display.DisplayPostprocessor@34de4588,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false module = net.imagej.updater.CheckForUpdates,null,null), called from non-EDT Thread:null [DEBUG] publish( context = org.scijava.Context@37c2ec05 consumed = false progress = -1 maximum = -1 status = Command finished: Up-to-date check warning = false,null,null), called from non-EDT Thread:null ZeissCZIReader initializing C:\Users\M1SRH\Downloads\\Overview_10X_DAPI.czi Unknown IlluminationType value 'Fluorescence' will be stored as "Other" There was a problem with the class loci.formats.meta.MetadataRetrieve which can be found here: /C:/Users/Public/DOCUME~1/Fiji/jars/bio-formats/formats-api.jar java.lang.NoSuchMethodError: loci.formats.meta.MetadataRetrieve.getStageLabelX(I)Ljava/lang/Double; at stitching.CommonFunctions.getPlanePosition(CommonFunctions.java:1127) at plugin.Stitching_Grid.getLayoutFromMultiSeriesFile(Stitching_Grid.java:893) at plugin.Stitching_Grid.run(Stitching_Grid.java:393) at ij.IJ.runUserPlugIn(IJ.java:199) at ij.IJ.runPlugIn(IJ.java:163) at ij.Executer.runCommand(Executer.java:131) at ij.Executer.run(Executer.java:64) at java.lang.Thread.run(Thread.java:662) java.lang.NoSuchMethodException: Could not find method loci.formats.meta.MetadataRetrieve.getStageLabelX(I)Ljava/lang/Do uble; There was a problem with the class loci.formats.meta.MetadataRetrieve which can be found here: /C:/Users/Public/DOCUME~1/Fiji/jars/bio-formats/formats-api.jar java.lang.NoSuchMethodError: loci.formats.meta.MetadataRetrieve.getStageLabelX(I)Ljava/lang/Double; at stitching.CommonFunctions.getPlanePosition(CommonFunctions.java:1127) at plugin.Stitching_Grid.getLayoutFromMultiSeriesFile(Stitching_Grid.java:893) at plugin.Stitching_Grid.run(Stitching_Grid.java:393) at ij.IJ.runUserPlugIn(IJ.java:199) at ij.IJ.runPlugIn(IJ.java:163) at ij.Executer.runCommand(Executer.java:131) at ij.Executer.run(Executer.java:64) at java.lang.Thread.run(Thread.java:662) at stitching.CommonFunctions.getPlanePosition(CommonFunctions.java:1127) at plugin.Stitching_Grid.getLayoutFromMultiSeriesFile(Stitching_Grid.java:893) at plugin.Stitching_Grid.run(Stitching_Grid.java:393) at ij.IJ.runUserPlugIn(IJ.java:199) at ij.IJ.runPlugIn(IJ.java:163) at ij.Executer.runCommand(Executer.java:131) at ij.Executer.run(Executer.java:64) at java.lang.Thread.run(Thread.java:662)