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Bug 277 - Sholl analysis is not running
Sholl analysis is not running
Status: RESOLVED WORKSFORME
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
Macintosh Mac OS
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2011-01-26 17:13 CST by Hirokazu Fukui
Modified: 2011-03-15 09:49 CDT
1 user (show)

See Also:
Description Hirokazu Fukui 2011-01-26 17:13:30 CST 
Hi, 

I was following the instructions on this page http://pacific.mpi-cbg.de/wiki/index.php/Simple_Neurite_Tracer:_Sholl_analysis
to perform Sholl analysis on my image.

One step says "... when you've got the red cross-hairs at a suitable point, still holding down control / alt and shift, press the 'a' key. Then you can release the other keys. You should see the Sholl analysis interface appear like this: ", but even when press the "a" key, nothing happens...

I am wondering if you have a solution for this.
Thank you,
Hiro




[Enter details of the problem or bug and how to reproduce it here.]

Information about your version of Java - this information is useful for the Fiji developers:
  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.5.8
  java.version => 1.6.0_20
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_20-b02-279-9M3165
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 16.3-b01-279
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /
Comment 1 Mark Longair 2011-02-08 07:22:32 CST 
It looks as if your copy of Fiji isn't up-to-date.  Could you run Help > Update Fiji, apply all the updates, restart Fiji and do the same again until you're told there is nothing to update?

If that doesn't fix the problem, I suspect that this is the issue with the window not having focus when you press those keys, as I explain here:

  http://pacific.mpi-cbg.de/cgi-bin/bugzilla/﷒0﷓
Comment 2 Johannes Schindelin 2011-03-15 09:36:38 CDT 
Mark, I think it is safe to assume that your suggestion fixed the issue, do you concur to close this issue as fixed?
Comment 3 Mark Longair 2011-03-15 09:49:29 CDT 
OK, I'm closing it as WORKSFORME.

Hirokazu Fukui: if my suggestion in the link above didn't fix the problem for you, please reopen this bug report.