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Bug 443 - Hyperstacks>Temporal-color code
Hyperstacks>Temporal-color code
Status: RESOLVED FIXED
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Windows
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2012-06-25 16:16 CDT by olivier bardot
Modified: 2012-06-26 20:59 CDT
1 user (show)

See Also:
Description olivier bardot 2012-06-25 16:16:42 CDT 
I am using the temporal-color code in Hyperstacks. I always have a Macro Error Window : Image -107 not found in line 119. selectImage (<newimgID>); since at least the last update.

Information about your version of Java - this information is useful for the Fiji developers:

  os.arch => x86
  os.name => Windows XP
  os.version => 5.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) Client VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: Up-to-date

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: C:\DOCUME~1\olbardot\MESDOC~1\Labo\LOGICI~1\Fiji.app/java/win32/jdk1.6.0_24/jre/
  ij.dir => C:\DOCUME~1\olbardot\MESDOC~1\Labo\LOGICI~1\Fiji.app

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Comment 1 Wayne Rasband 2012-06-25 18:46:17 CDT 
I am able to reproduce this regression and should have a fix in the next day or two. It seems to be an unintended consequence of this v1.46p bug fix:

   Fixed bugs in the Image>Hyperstacks>Stack to Hyperstack and
   Hyperstack to Stack commands that caused them to not work as
   expected in batch mode macros.

-wayne
Comment 2 Wayne Rasband 2012-06-26 05:03:28 CDT 
This regression should be fixed in the 1.46r daily build. You can upgrade by using the Help>Update ImageJ command and selecting "daily build" from the drop down menu.

-wayne
Comment 3 Johannes Schindelin 2012-06-26 06:36:17 CDT 
Wayne, could you describe _how_ you fixed it? (I always love to learn from other people's mistakes ;-)
Comment 4 Wayne Rasband 2012-06-26 20:36:59 CDT 
I fixed this regression by undoing a v1.46p16 bug fix that caused batch mode macros to unexpectedly display images when they used the Image>Hyperstacks>Stack to Hyperstack or Hyperstack to Stack commands. The changes for this fix (in HyperStackConverter.java) are at:

http://fiji.sc/cgi-bin/gitweb.cgi?p=imagej.git;a=blobdiff;f=ij/plugin/HyperStackConverter.java;h=ff18d6fef8aedc4d0ca1e04bb29112b5c3c19dea;hp=543b6dfbc655f0a1be5f30c4dd1838d504a104a8;hb=69cd49b720d2b56453052eae382be6fed6b5d451;hpb=1b966c3cc566705595e6743bfd20854263db553f

Unfortunately, this fix could cause batch mode macros that tracked images by IDs to fail. An example of such as macro is one that implements the Image>Hyperstacks>Temporal-Color Code in Fiji(http://imagej.nih.gov/ij/macros/Temporal-Color_Code.txt).

The changes that undo the problematic bug fix are at:

http://fiji.sc/cgi-bin/gitweb.cgi?p=imagej.git;a=blobdiff;f=ij/plugin/HyperStackConverter.java;h=a31400eb9008a46a9a06df296d162dec5771cdbe;hp=ff18d6fef8aedc4d0ca1e04bb29112b5c3c19dea;hb=d39cf2a092f380f20af98f85007b51cb3656f794;hpb=d256da30001e5b635e5a6dd0fa44485bcb9938cb

-wayne
Comment 5 Johannes Schindelin 2012-06-26 20:59:55 CDT 
Thanks Wayne! Very appreciated! As trusty Jenkins picked up your new release which includes the fixes, this bug is fixed.