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Bug 981 - Simple neurite tracer exceptions
Simple neurite tracer exceptions
Status: NEEDSINFO
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Windows
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2014-12-29 01:24 CST by 271-0354
Modified: 2014-12-29 12:13 CST
2 users (show)

See Also:
Description 271-0354 2014-12-29 01:24:16 CST 
It does not work Simple neurite tracer.
I searched internet for this problem, someone said Status of Jave(update) could be the reason so I checked Java but my computer already has the latest version of Java, I don't know what this problem is.

Information about your version of Java:

  os.arch => x86
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) Client VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: C:\Users\user\Desktop\DOWNLO~1\Fiji.app/java/win32/jdk1.6.0_24//jre
  imagej.dir => C:\Users\user\Desktop\DOWNLO~1\Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20141223080235)
Fiji: http://fiji.sc/update/ (last check:20141222222604)
3D ImageJ Suite: http://sites.imagej.net/Tboudier/ (last check:20141208165245)
BAR: http://sites.imagej.net/Tiago/ (last check:20141125232254)
Morphology: http://sites.imagej.net/Landini/ (last check:20140723235558)
NucleusJ: http://sites.imagej.net/PouletAxel/ (last check:20141101183602)
Tango: http://sites.imagej.net/Tango/ (last check:20141205014756)

Files not up-to-date:
  f85574f3 (OBSOLETE_MODIFIED) 20141220235547 lib/Win64/setrEnv.ps1
  610f0f52 (LOCAL_ONLY) 20141221234637 macros/BatchMacro.ijm
Comment 1 Curtis Rueden 2014-12-29 12:13:54 CST 
Thanks for the report! A few things to check:

* Simple Neurite Tracer uses the 3D Viewer. Does the 3D Viewer work for you in general? File > Samples > T1 Head, then Plugins > 3D Viewer.

* Can you please test with a Fiji installation that has no extra update sites enabled? If it works, then try enabling your desired update sites one by one until you find the one which breaks things.

If the 3D Viewer works, and the problem still happens with a freshly downloaded Fiji without extra update sites, then please post the exact exception you are seeing, along with the exact steps you took to generate it.