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TrakEM2 is an ImageJ plugin for morphological data mining, three-dimensional modeling and image stitching, registration, editing and annotation.
TrakEM2 is an ImageJ plugin for morphological data mining, three-dimensional modeling and image stitching, registration, editing and annotation.
The hardware-accelerated 3D Viewer uses Java3D to display surfaces, orthogonal slices and to perform volume rendering.
The hardware-accelerated 3D Viewer uses Java3D to display surfaces, orthogonal slices and to perform volume rendering.
The Simple Neurite Tracer allows you to segment linear structures in 3D images by marking both ends in 3D and letting the tracer work out the rest.
The Simple Neurite Tracer allows you to segment linear structures in 3D images by marking both ends in 3D and letting the tracer work out the rest.
The Stitching plugin makes it a breeze to stitch multiple overlapping recordings of a single specimen into a single 3D image.
The Stitching plugin makes it a breeze to stitch multiple overlapping recordings of a single specimen into a single 3D image.
The Feature Extraction plugins provide fully automatic detection of SIFT or MOPS features and registration using corresponding features of two images.
The Feature Extraction plugins provide fully automatic detection of SIFT or MOPS features and registration using corresponding features of two images.
Stay up-to-date with the Update Fiji|Fiji Updater.
Stay up-to-date with the Fiji Updater.
The 3D Viewer plugin can display 3D stacks via volume rendering, isosurfaces or as orthoslices.
The 3D Viewer plugin can display 3D stacks via volume rendering, isosurfaces or as orthoslices.
The TrakEM2 plugin can be used to annotate images non-destructively.
The TrakEM2 plugin can be used to annotate images non-destructively.
The TrakEM2 plugin offers a range of manual and semi-automatic segmentation tools.
The TrakEM2 plugin offers a range of manual and semi-automatic segmentation tools.
The SIOX: Simple Interactive Object Extraction|SIOX plugin provides semi-automatic segmentation of color images via Simple Interactive Object Extraction.
The SIOX plugin provides semi-automatic segmentation of color images via Simple Interactive Object Extraction.
The SPIM Registration plugin provides fast, reliable and high-precision registration and fusion of Selective Plane Illumination Microscopy data as well as other 3d multi-angle image acquisitions.
The SPIM Registration plugin provides fast, reliable and high-precision registration and fusion of Selective Plane Illumination Microscopy data as well as other 3d multi-angle image acquisitions.
The TrakEM2 plugin provides the means to [http://www.ini.uzh.ch/~acardona/trakem2_manual.html#trees reconstruct neuronal arbors in 3D], including [http://www.ini.uzh.ch/~acardona/trakem2_manual.html#connectors relationships between trees] to represent synapses.
The TrakEM2 plugin provides the means to reconstruct neuronal arbors in 3D, including relationships between trees to represent synapses.
The TrakEM2 provides the means to manually reconstruct neurons and synapses with [http://www.ini.uzh.ch/~acardona/trakem2_manual.html#trees 3D arbors] and [http://www.ini.uzh.ch/~acardona/trakem2_manual.html#connectors connector] objects that relate them.
The TrakEM2 provides the means to manually reconstruct neurons and synapses with 3D arbors and connector objects that relate them.

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