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Bug 1042 - Loading XML files from saved TrackMate files result in errors
Loading XML files from saved TrackMate files result in errors
Status: RESOLVED INVALID
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
Macintosh Mac OS
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2015-03-31 10:11 CDT by Jeff Meteer
Modified: 2015-10-20 11:02 CDT
2 users (show)

See Also:
Description Jeff Meteer 2015-03-31 10:11:37 CDT 
I use TrackMate to track particles and it works great. Since the lastest update, when I save a file (defaults to .XML) and then load it back into FIJI, there are problems. The first is that the spots are all solid circles instead of outlined circles. The second is that I cannot display local tracks. I have tried on two separate machines and it seems like a bug. I uploaded a sample containing the original .tif and .XML files.

Information about your version of Java:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.8.5
  java.version => 1.6.0_65
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_65-b14-462-11M4609
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.65-b04-462
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
  imagej.dir => /Users/jdm013/Desktop/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150328005348)
Fiji: http://fiji.sc/update/ (last check:20150324232333)

Files not up-to-date:
  1ad3be0d (LOCAL_ONLY) 20141125111502 jars/jpedalSTD.jar
Comment 1 Jean-Yves Tinevez 2015-04-14 02:00:22 CDT 
Hi Jeff, 
Sorry for the long delay in answering. 
First, spots are expected to be all solid lines. 
Second, I really need the files you mention in the report to investigate the problem. Could you send them to me?
Comment 2 Jean-Yves Tinevez 2015-10-18 10:34:04 CDT 
Hi Jeff,
Any news? Can I close this bug?