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Bugzilla – Bug 1056 |
Problem opening TIFF files |
Last modified: 2015-04-16 10:57:20 CDT |
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NOTICE! This is a static HTML version of a legacy Fiji BugZilla bug. The Fiji project now uses GitHub Issues for issue tracking. Please file all new issues there. |
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I have several 5D tiff stacks. Some open without an issue, but some open the bioformats dialog (and will not open using the dialog). I have no clue why. I uploaded a sample image that is giving me the error. Also, I got the following errors when trying to submit this bug via Fiji: <!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"> <html lang="en"> <head> <title>Suspicious Action</title> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <link rel="Top" href="http://fiji.sc/bugzilla/"> <link rel="Saved Searches" title="My Bugs" href="buglist.cgi?resolution=---&emailassigned_to1=1&emailreporter1=1&emailtype1=exact&email1=jmjxn%40email.unc.edu"> <link href="../css/global.cssquot; rel="alternate stylesheet" title="Classic"><link href="../css/global.cssquot; rel="stylesheet" type="text/css" ><link href="../css/global.cssquot; rel="stylesheet" type="text/css" ><!--[if lte IE 7]> <link href="skins/standard/IE-fixes.css" rel="stylesheet" type="text/css" > <![endif]--> <link href="../css/dusk.cssquot; rel="stylesheet" type="text/css" title="Dusk"><link href="../css/dusk.cssquot; rel="stylesheet" type="text/css" title="Dusk"> <script type="text/javascript" src="js/yui/yahoo-dom-event/yahoo-dom-event.js"></script><script type="text/javascript" src="js/yui/cookie/cookie-min.js"></script><script type="text/javascript" src="js/global.js"></script> <script type="text/javascript"> <!-- YAHOO.namespace('bugzilla'); YAHOO.util.Event.addListener = function (el, sType, fn, obj, overrideContext) { if ( ("onpagehide" in window || YAHOO.env.ua.gecko) && sType === "unload") { sType = "pagehide"; }; var capture = ((sType == "focusin" || sType == "focusout") && !YAHOO.env.ua.ie) ? true : false; return this._addListener(el, this._getType(sType), fn, obj, overrideContext, capture); }; if ( "onpagehide" in window || YAHOO.env.ua.gecko) { YAHOO.util.Event._simpleRemove(window, "unload", YAHOO.util.Event._unload); } function unhide_language_selector() { YAHOO.util.Dom.removeClass( 'lang_links_container', 'bz_default_hidden' ); } YAHOO.util.Event.onDOMReady(unhide_language_selector); var BUGZILLA = { param: { cookiepath: '\/bugzilla\/', maxusermatches: 1000 }, constant: { COMMENT_COLS: 80 }, string: { attach_desc_required: 'You must enter a Description for this attachment.', component_required: 'You must select a Component for this bug.', description_required: 'You must enter a Description for this bug.', short_desc_required: 'You must enter a Summary for this bug.', version_required: 'You must select a Version for this bug.' } }; // --> </script> <link rel="search" type="application/opensearchdescription+xml" title="Bugzilla" href="./search_plugin.cgi"> <link rel="shortcut icon" href="images/favicon.ico" > </head> <body onload="" class="fiji-sc-bugzilla yui-skin-sam"> <div id="header"> <div id="banner"> </div> <table border="0" cellspacing="0" cellpadding="0" id="titles"> <tr> <td id="title"> <p>Bugzilla – Suspicious Action</p> </td> </tr> </table> <table id="lang_links_container" cellpadding="0" cellspacing="0" class="bz_default_hidden"><tr><td> </td></tr></table> <ul class="links"> <li><a href="./">Home</a></li> <li><span class="separator">| </span><a href="enter_bug.cgi">New</a></li> <li><span class="separator">| </span><a href="query.cgi">Search</a></li> <li class="form"> <span class="separator">| </span> <form action="buglist.cgi" method="get" onsubmit="if (this.quicksearch.value == '') { alert('Please enter one or more search terms first.'); return false; } return true;"> <input type="hidden" id="no_redirect_top" name="no_redirect" value="0"> <script type="text/javascript"> if (history && history.replaceState) { var no_redirect = document.getElementById("no_redirect_top"); no_redirect.value = 1; } </script> <input class="txt" type="text" id="quicksearch_top" name="quicksearch" title="Quick Search" value=""> <input class="btn" type="submit" value="Search" id="find_top"></form> <li><span class="separator">| </span><a href="report.cgi">Reports</a></li> <li></li> <li><span class="separator">| </span><a href="userprefs.cgi">Preferences</a></li> <li> <span class="separator">| </span> <a href="index.cgi?logout=1">Log out</a> jmjxn@email.unc.edu</li> </ul> </div> <div id="bugzilla-body"> <div class="throw_error"> It looks like you didn't come from the right page (you have no valid token for the <em>create_bug</em> action while processing the 'post_bug.cgi' script). The reason could be one of:<br> <ul> <li>You clicked the "Back" button of your web browser after having successfully submitted changes, which is generally not a good idea (but harmless).</li> <li>You entered the URL in the address bar of your web browser directly, which should be safe.</li> <li>You clicked on a URL which redirected you here <b>without your consent</b>, in which case this action is much more critical.</li> </ul> Are you sure you want to commit these changes anyway? This may result in unexpected and undesired results. </div> <form name="check" id="check" method="post" action="post_bug.cgi"><input type="hidden" name="priority" value="P4"> <input type="hidden" name="bug_file_loc" value="http://"> <input type="hidden" name="cc" value="jmjxn@email.unc.edu"> <input type="hidden" name="rep_platform" value="PC"> <input type="hidden" name="blocked" value=""> <input type="hidden" name="assigned_to" value=""> <input type="hidden" name="short_desc" value="Problem opening TIFF files"> <input type="hidden" name="token" value="Yy9VYaC152"> <input type="hidden" name="bug_severity" value="normal"> <input type="hidden" name="bug_status" value="NEW"> <input type="hidden" name="version" value="unspecified"> <input type="hidden" name="estimated_time" value=""> <input type="hidden" name="deadline" value=""> <input type="hidden" name="comment" value="I have several 5D tiff stacks. Some open without an issue, but some open the bioformats dialog (and will not open using the dialog). I have no clue why. I uploaded two sample images, one which gives the error and one which doesn't.

Information about your version of Java:

 os.arch => amd64
 os.name => Windows 7
 os.version => 6.1
 java.version => 1.6.0_24
 java.vendor => Sun Microsystems Inc.
 java.runtime.name => Java(TM) SE Runtime Environment
 java.runtime.version => 1.6.0_24-b07
 java.vm.name => Java HotSpot(TM) 64-Bit Server VM
 java.vm.version => 19.1-b02
 java.vm.vendor => Sun Microsystems Inc.
 java.vm.info => mixed mode
 java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
 java.specification.name => Java Platform API Specification
 java.specification.version => 1.6
 sun.cpu.endian => little
 sun.desktop => windows
 file.separator => \

The up-to-date check says: CHECK_TURNED_OFF

Information relevant to JAVA_HOME related problems:

 JAVA_HOME is set to: C:\Users\Matt\Desktop\Fiji.app/java/win64/jdk1.6.0_24//jre
 imagej.dir => C:\Users\Matt\Desktop\Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150203171720)
Fiji: http://fiji.sc/update/ (last check:20150203171758)

Files not up-to-date:
 eb1fd0b1 (MODIFIED) 20150416105739 jars/ij-1.49m.jar
 1ad3be0d (LOCAL_ONLY) 20141217044922 jars/jpedalSTD.jar
 d3f6a936 (LOCAL_ONLY) 20150102161842 macros/AutoContrast.ijm
 a587f1b3 (LOCAL_ONLY) 20141219111731 macros/BatchMacro.ijm
 205b2a59 (LOCAL_ONLY) 20141219111154 macros/BatchRotat.txt
 9a04d266 (LOCAL_ONLY) 20141219105247 macros/RotateLeft90.ijm
 12e6f5b3 (LOCAL_ONLY) 20141219104949 macros/RotateLeft90.txt
 2cd8b322 (LOCAL_ONLY) 20141219110909 macros/RotateLeft_batch.ijm
 163c68ed (LOCAL_ONLY) 20150102175000 macros/Stitching+Analysis.ijm
 d4d09e8f (LOCAL_ONLY) 20150108132410 macros/Stitching+Analysis_time.ijm
 89f41efe (LOCAL_ONLY) 20150223145032 plugins/A_posteriori_shading_correction_514_v3/A_posteriori_shading_correction_514_v3/A_posteriori_shading_correction_514_v3.class
 b378efaf (LOCAL_ONLY) 20150223145032 plugins/A_posteriori_shading_correction_514_v3/A_posteriori_shading_correction_514_v3/Matrice.class
 324f76ae (LOCAL_ONLY) 20150223145034 plugins/A_posteriori_shading_correction_514_v3/A_posteriori_shading_correction_514_v3/poinToolbarBis.class
 f73e543f (LOCAL_ONLY) 20150223145032 plugins/A_posteriori_shading_correction_514_v3/A_posteriori_shading_correction_514_v3/pointActionBis.class
 2937bc66 (LOCAL_ONLY) 20150223145032 plugins/A_posteriori_shading_correction_514_v3/A_posteriori_shading_correction_514_v3/pointHandlerBis.class
 1c0c7603 (LOCAL_ONLY) 20150223145034 plugins/A_posteriori_shading_correction_514_v3/A_posteriori_shading_correction_514_v3/pointPickerClearAllBis.class
 83dbc2b3 (LOCAL_ONLY) 20150223145034 plugins/A_posteriori_shading_correction_514_v3/A_posteriori_shading_correction_514_v3/pointPickerColorSettingsBis.class
 36975694 (LOCAL_ONLY) 20150223145034 plugins/A_posteriori_shading_correction_514_v3/A_posteriori_shading_correction_514_v3/pointPickerFileBis.class
 20c55e1c (LOCAL_ONLY) 20150223145034 plugins/A_posteriori_shading_correction_514_v3/A_posteriori_shading_correction_514_v3/pointPickerTerminateBis.class
 06ebfc11 (LOCAL_ONLY) 20150223145034 plugins/A_posteriori_shading_correction_514_v3/A_posteriori_shading_correction_514_v3/src/A_posteriori_shading_correction_514_v3.txt
 54e92988 (LOCAL_ONLY) 20150103154517 plugins/ActionBar/ImageSelector_.txt
 0786c282 (LOCAL_ONLY) 20150102182035 plugins/ActionBar/new_action_bar.txt
 3ac631b6 (LOCAL_ONLY) 20150128094625 plugins/Calculator_Plus.class
 203df37a (LOCAL_ONLY) 20141230151731 plugins/Time_Series_Analyzer.jar
 be06fe59 (LOCAL_ONLY) 20150102181404 plugins/action_bar202.jar
"> <input type="hidden" name="component" value="Plugins"> <input type="hidden" name="dependson" value=""> <input type="hidden" name="hidden" value="enter_bug
"> <input type="hidden" name="target_milestone" value="---"> <input type="hidden" name="product" value="Fiji"> <input type="hidden" name="commentprivacy" value="0"> <input type="hidden" name="op_sys" value="Windows"> <input type="submit" id="confirm" value="Confirm Changes"> </form> <p>Or throw away these changes and go back to <a href="index.cgi">index.cgi</a>.</p> </div> <div id="footer"> <div class="intro"></div> <ul id="useful-links"> <li id="links-actions"><ul class="links"> <li><a href="./">Home</a></li> <li><span class="separator">| </span><a href="enter_bug.cgi">New</a></li> <li><span class="separator">| </span><a href="query.cgi">Search</a></li> <li class="form"> <span class="separator">| </span> <form action="buglist.cgi" method="get" onsubmit="if (this.quicksearch.value == '') { alert('Please enter one or more search terms first.'); return false; } return true;"> <input type="hidden" id="no_redirect_bottom" name="no_redirect" value="0"> <script type="text/javascript"> if (history && history.replaceState) { var no_redirect = document.getElementById("no_redirect_bottom"); no_redirect.value = 1; } </script> <input class="txt" type="text" id="quicksearch_bottom" name="quicksearch" title="Quick Search" value=""> <input class="btn" type="submit" value="Search" id="find_bottom"></form> <li><span class="separator">| </span><a href="report.cgi">Reports</a></li> <li></li> <li><span class="separator">| </span><a href="userprefs.cgi">Preferences</a></li> <li> <span class="separator">| </span> <a href="index.cgi?logout=1">Log out</a> jmjxn@email.unc.edu</li> </ul> </li> <li id="links-saved"> <ul class="links"> <li><a href="buglist.cgi?resolution=---&emailassigned_to1=1&emailreporter1=1&emailtype1=exact&email1=jmjxn%40email.unc.edu">My Bugs</a></li> </ul> </li> </ul> <div class="outro"></div> </div> </body> </html> <!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"> <html lang="en"> <head> <title>Enter Bug</title> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> <link rel="Top" href="http://fiji.sc/bugzilla/"> <link rel="Saved Searches" title="My Bugs" href="buglist.cgi?resolution=---&emailassigned_to1=1&emailreporter1=1&emailtype1=exact&email1=jmjxn%40email.unc.edu"> <link href="../css/global.cssquot; rel="alternate stylesheet" title="Classic"><link href="../css/global.cssquot; rel="stylesheet" type="text/css" ><!--[if lte IE 7]> <link href="skins/standard/IE-fixes.css" rel="stylesheet" type="text/css" > <![endif]--> <link href="../css/dusk.cssquot; rel="stylesheet" type="text/css" title="Dusk"> <script type="text/javascript" src="js/yui/yahoo-dom-event/yahoo-dom-event.js"></script><script type="text/javascript" src="js/yui/cookie/cookie-min.js"></script><script type="text/javascript" src="js/global.js"></script> <script type="text/javascript"> <!-- YAHOO.namespace('bugzilla'); YAHOO.util.Event.addListener = function (el, sType, fn, obj, overrideContext) { if ( ("onpagehide" in window || YAHOO.env.ua.gecko) && sType === "unload") { sType = "pagehide"; }; var capture = ((sType == "focusin" || sType == "focusout") && !YAHOO.env.ua.ie) ? true : false; return this._addListener(el, this._getType(sType), fn, obj, overrideContext, capture); }; if ( "onpagehide" in window || YAHOO.env.ua.gecko) { YAHOO.util.Event._simpleRemove(window, "unload", YAHOO.util.Event._unload); } function unhide_language_selector() { YAHOO.util.Dom.removeClass( 'lang_links_container', 'bz_default_hidden' ); } YAHOO.util.Event.onDOMReady(unhide_language_selector); var BUGZILLA = { param: { cookiepath: '\/bugzilla\/', maxusermatches: 1000 }, constant: { COMMENT_COLS: 80 }, string: { attach_desc_required: 'You must enter a Description for this attachment.', component_required: 'You must select a Component for this bug.', description_required: 'You must enter a Description for this bug.', short_desc_required: 'You must enter a Summary for this bug.', version_required: 'You must select a Version for this bug.' } }; // --> </script> <link rel="search" type="application/opensearchdescription+xml" title="Bugzilla" href="./search_plugin.cgi"> <link rel="shortcut icon" href="images/favicon.ico" > </head> <body onload="" class="fiji-sc-bugzilla yui-skin-sam"> <div id="header"> <div id="banner"> </div> <table border="0" cellspacing="0" cellpadding="0" id="titles"> <tr> <td id="title"> <p>Bugzilla – Enter Bug</p> </td> </tr> </table> <table id="lang_links_container" cellpadding="0" cellspacing="0" class="bz_default_hidden"><tr><td> </td></tr></table> <ul class="links"> <li><a href="./">Home</a></li> <li><span class="separator">| </span><a href="enter_bug.cgi">New</a></li> <li><span class="separator">| </span><a href="query.cgi">Search</a></li> <li class="form"> <span class="separator">| </span> <form action="buglist.cgi" method="get" onsubmit="if (this.quicksearch.value == '') { alert('Please enter one or more search terms first.'); return false; } return true;"> <input type="hidden" id="no_redirect_top" name="no_redirect" value="0"> <script type="text/javascript"> if (history && history.replaceState) { var no_redirect = document.getElementById("no_redirect_top"); no_redirect.value = 1; } </script> <input class="txt" type="text" id="quicksearch_top" name="quicksearch" title="Quick Search" value=""> <input class="btn" type="submit" value="Search" id="find_top"></form> <li><span class="separator">| </span><a href="report.cgi">Reports</a></li> <li></li> <li><span class="separator">| </span><a href="userprefs.cgi">Preferences</a></li> <li> <span class="separator">| </span> <a href="docs/en/html/bugreports.html" target="_blank">Help</a> </li> <li> <span class="separator">| </span> <a href="index.cgi?logout=1">Log out</a> jmjxn@email.unc.edu</li> </ul> </div> <div id="bugzilla-body"> <h2>First, you must pick a product on which to enter a bug: </h2> <table> <tr> <th align="right" valign="top"> <a href="enter_bug.cgi?product=Fiji">Fiji</a>: </th> <td valign="top">http://fiji.sc/</td> </tr> <tr> <th align="right" valign="top"> <a href="enter_bug.cgi?product=ImageJ">ImageJ</a>: </th> <td valign="top">http://imagej.net/</td> </tr> <tr> <th align="right" valign="top"> <a href="enter_bug.cgi?product=Website">Website</a>: </th> <td valign="top">http://imagej.net/</td> </tr> <tr> <th colspan="2"> </th> </tr> </table> </div> <div id="footer"> <div class="intro"></div> <ul id="useful-links"> <li id="links-actions"><ul class="links"> <li><a href="./">Home</a></li> <li><span class="separator">| </span><a href="enter_bug.cgi">New</a></li> <li><span class="separator">| </span><a href="query.cgi">Search</a></li> <li class="form"> <span class="separator">| </span> <form action="buglist.cgi" method="get" onsubmit="if (this.quicksearch.value == '') { alert('Please enter one or more search terms first.'); return false; } return true;"> <input type="hidden" id="no_redirect_bottom" name="no_redirect" value="0"> <script type="text/javascript"> if (history && history.replaceState) { var no_redirect = document.getElementById("no_redirect_bottom"); no_redirect.value = 1; } </script> <input class="txt" type="text" id="quicksearch_bottom" name="quicksearch" title="Quick Search" value=""> <input class="btn" type="submit" value="Search" id="find_bottom"></form> <li><span class="separator">| </span><a href="report.cgi">Reports</a></li> <li></li> <li><span class="separator">| </span><a href="userprefs.cgi">Preferences</a></li> <li> <span class="separator">| </span> <a href="docs/en/html/bugreports.html" target="_blank">Help</a> </li> <li> <span class="separator">| </span> <a href="index.cgi?logout=1">Log out</a> jmjxn@email.unc.edu</li> </ul> </li> <li id="links-saved"> <ul class="links"> <li><a href="buglist.cgi?resolution=---&emailassigned_to1=1&emailreporter1=1&emailtype1=exact&email1=jmjxn%40email.unc.edu">My Bugs</a></li> </ul> </li> </ul> <div class="outro"></div> </div> </body> </html>