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Bugzilla – Bug 1064 |
convert 16 to 8bit 4CH hyperstack fails |
Last modified: 2015-05-05 14:42:18 CDT |
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NOTICE! This is a static HTML version of a legacy Fiji BugZilla bug. The Fiji project now uses GitHub Issues for issue tracking. Please file all new issues there. |
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tried on virtual and also on real stack, but conversion fails with mssg: [also unclear why FIJI name is hijacked by 'open spim' name after last patch cycles] OpenSPIM 2.0.0-rc-30/1.49s; Java 1.6.0_24 [64-bit]; Windows 7 6.1; 4896MB of 13000MB (37%) java.lang.NullPointerException at ij.CompositeImage.setup(CompositeImage.java:136) at ij.CompositeImage.reset(CompositeImage.java:534) at ij.ImagePlus.setStack(ImagePlus.java:683) at ij.process.StackConverter.convertRGBToGray8(StackConverter.java:102) at ij.process.StackConverter.convertToGray8(StackConverter.java:40) at ij.plugin.Converter.convert(Converter.java:59) at ij.plugin.Converter.run(Converter.java:20) at ij.IJ.runPlugIn(IJ.java:169) at ij.Executer.runCommand(Executer.java:131) at ij.Executer.run(Executer.java:64) at java.lang.Thread.run(Thread.java:662) Information about your version of Java: os.arch => amd64 os.name => Windows 7 os.version => 6.1 java.version => 1.6.0_24 java.vendor => Sun Microsystems Inc. java.runtime.name => Java(TM) SE Runtime Environment java.runtime.version => 1.6.0_24-b07 java.vm.name => Java HotSpot(TM) 64-Bit Server VM java.vm.version => 19.1-b02 java.vm.vendor => Sun Microsystems Inc. java.vm.info => mixed mode java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment java.specification.name => Java Platform API Specification java.specification.version => 1.6 sun.cpu.endian => little sun.desktop => windows file.separator => \ The up-to-date check says: REMIND_LATER Information relevant to JAVA_HOME related problems: JAVA_HOME is set to: E:\DEC201~1/java/win64/jdk1.6.0_24//jre imagej.dir => E:\DEC201~1 Information about the version of each plugin: Activated update sites: ImageJ: http://update.imagej.net/ (last check:20150501134914) Fiji: http://fiji.sc/update/ (last check:20150504084352) 3D ImageJ Suite: http://sites.imagej.net/Tboudier/ (last check:20150427052945) FFMPEG: http://fiji.sc/~schindelin/ffmpeg-plugins/ (last check:20130606102449) GDSC-SMLM: http://sites.imagej.net/GDSC-SMLM/ (last check:20150327072750) HDF5: http://sites.imagej.net/Ronneber/ (last check:20150214064119) IJPB-plugins: http://sites.imagej.net/IJPB-plugins/ (last check:20150323044329) Morphology: http://sites.imagej.net/Landini/ (last check:20140723095558) MIST: http://sites.imagej.net/NIST-ISG-MIST/ (last check:20150416125920) OpenSPIM: http://openspim.org/update/ (last check:20150427101206) BigDataViewer: http://sites.imagej.net/Pietzsch/ (last check:20141221090506) Micro-Manager-dev: http://sites.imagej.net/Micro-Manager-dev/ (last check:20150501012722) Files not up-to-date: 1ad3be0d (LOCAL_ONLY) 20141222042830 jars/jpedalSTD.jar 3b282216 (LOCAL_ONLY) 20150430163144 mm/win32/OlympusIX3Control/OlympusIX3Control.old.exe 956e4529 (LOCAL_ONLY) 20150430163144 mm/win64/OlympusIX3Control/OlympusIX3Control.old.exe 6d337b7a (LOCAL_ONLY) 20140730142734 plugins/Accurate_Gaussian_Blur.class 6e9d50db (LOCAL_ONLY) 20140320051924 plugins/Adjustable_Watershed.class 12ec0761 (LOCAL_ONLY) 20120224100622 plugins/Align_RGB_planes.class 0c575fd1 (LOCAL_ONLY) 20141209160514 plugins/BioVoxxel_Plugins.jar 52ff6766 (LOCAL_ONLY) 20150115075008 plugins/Create_Template.jar 55de57f2 (LOCAL_ONLY) 20050408121420 plugins/DecCredits$1.class 66a64476 (LOCAL_ONLY) 20050408121420 plugins/DecCredits.class fd4ce3cd (LOCAL_ONLY) 20050408103628 plugins/DeconvolutionFFT.class b0398adb (LOCAL_ONLY) 20141028073350 plugins/DeconvolutionLab/DeconvolutionLab_.jar 8866a3cd (LOCAL_ONLY) 20050408103628 plugins/DeconvolutionSolution.class ce989b93 (LOCAL_ONLY) 20050408103628 plugins/DeconvolutionWavelets.class 13072662 (LOCAL_ONLY) 20050408121420 plugins/Deconvolution_.class 11326750 (LOCAL_ONLY) 20050408103628 plugins/FFT1D.class 18f23277 (LOCAL_ONLY) 20050408103628 plugins/FourierSpace.class 44693e65 (LOCAL_ONLY) 20150325121214 plugins/Frac_Lac.jar 348da731 (LOCAL_ONLY) 20141126044659 plugins/GHT_.jar 15a0aac2 (LOCAL_ONLY) 20050408150536 plugins/GibsonPSF.class 52861b7c (LOCAL_ONLY) 20050408150244 plugins/GibsonPSFF.class f481dc68 (LOCAL_ONLY) 20120817074900 plugins/Hybrid_2D_Filters.class 6b2de3e5 (LOCAL_ONLY) 20120817084143 plugins/Hybrid_3D_Filters.class e9cb6eb7 (LOCAL_ONLY) 20150115083713 plugins/Image_CorrelationJ_1o.class d6bc39b9 (LOCAL_ONLY) 20141023044548 plugins/Jay_Plugins.jar 04b38ca7 (LOCAL_ONLY) 20141023044548 plugins/Jay_Plugins2.jar 71ae5c42 (LOCAL_ONLY) 20140509130342 plugins/KalmanOpenStackFilter_.class 44f1acfa (LOCAL_ONLY) 20121128135145 plugins/Mexican_Hat_Filter.class 53c5c1ad (LOCAL_ONLY) 20141103073745 plugins/NL_Means_.jar 4ed208ff (LOCAL_ONLY) 20140929064046 plugins/NanoTrackJ_.jar 21927175 (LOCAL_ONLY) 20140808090713 plugins/PIV_.jar b3b13b1f (LOCAL_ONLY) 20050408150244 plugins/PSFCredits$1.class cb99705d (LOCAL_ONLY) 20050408150244 plugins/PSFCredits.class de90b917 (LOCAL_ONLY) 20050408150536 plugins/PSFCreditsG$1.class e33950eb (LOCAL_ONLY) 20050408150536 plugins/PSFCreditsG.class 9f2412ff (LOCAL_ONLY) 20141028082626 plugins/PSF_Generator.jar 5a3abd78 (LOCAL_ONLY) 20050408150536 plugins/PSF_Gibson_.class 65b190f7 (LOCAL_ONLY) 20121002063426 plugins/PSF_Simple_.class 0c89ccf5 (LOCAL_ONLY) 20140507100709 plugins/PoissonNMF_.jar 12289f6e (LOCAL_ONLY) 20110916093010 plugins/PureDenoise_.jar 33ca5f87 (LOCAL_ONLY) 20141215122204 plugins/Thunder_STORM.jar 69b16199 (LOCAL_ONLY) 20050408103628 plugins/WaveDaub4.class f0990b22 (LOCAL_ONLY) 20050408103628 plugins/WaveDaub4Filter.class 27901023 (LOCAL_ONLY) 20050408152652 plugins/Wavelet_Deconvolution_.class 71331805 (LOCAL_ONLY) 20140314082430 plugins/jacop_.jar 9bbfb280 (LOCAL_ONLY) 20140225135257 plugins/octane2_.jar