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Bugzilla – Bug 1164 |
Bug in Analyze Skeleton (2D/3D) |
Last modified: 2015-10-13 11:07:35 CDT |
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Dear all, when skeletonizing images it can happen that the skeletons are only 1px. I think that the spx and spy values in the Results are not correct. I can“t comment on spy, since I only have 2D data. The following macro illustrates this. e.g. spx and spy values in row 4 and 4 are identical. run("Blobs (25K)"); run("Make Binary"); run("Skeletonize (2D/3D)"); run("Analyze Skeleton (2D/3D)", "prune=none calculate show"); selectWindow("Results"); Best, Martin Information about your version of Java: os.arch => amd64 os.name => Windows 7 os.version => 6.1 java.version => 1.6.0_24 java.vendor => Sun Microsystems Inc. java.runtime.name => Java(TM) SE Runtime Environment java.runtime.version => 1.6.0_24-b07 java.vm.name => Java HotSpot(TM) 64-Bit Server VM java.vm.version => 19.1-b02 java.vm.vendor => Sun Microsystems Inc. java.vm.info => mixed mode java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment java.specification.name => Java Platform API Specification java.specification.version => 1.6 sun.cpu.endian => little sun.desktop => windows file.separator => \ The up-to-date check says: REMIND_LATER Information relevant to JAVA_HOME related problems: JAVA_HOME is set to: C:\Users\martin\Desktop\FIJI~1.APP/java/win64/jdk1.6.0_24//jre imagej.dir => C:\Users\martin\Desktop\FIJI~1.APP Information about the version of each plugin: Activated update sites: ImageJ: http://update.imagej.net/ (last check:20150915154157) Fiji: http://update.fiji.sc/ (last check:20150922183051) 3D ImageJ Suite: http://sites.imagej.net/Tboudier/ (last check:20150914070333) BAR: http://sites.imagej.net/Tiago/ (last check:20150923203109) Biomedgroup: http://sites.imagej.net/Biomedgroup/ (last check:20150921121108) BioVoxxel: http://sites.imagej.net/BioVoxxel/ (last check:20150819111801) Cookbook: http://sites.imagej.net/Cookbook/ (last check:20150302230629) CMCI-EMBL: http://sites.imagej.net/Miura/ (last check:20150828112959) MiToBo: http://sites.imagej.net/MiToBo/ (last check:20150617181533) MOSAIC ToolSuite: http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/ (last check:20150831162554) PHANTAST: http://sites.imagej.net/Nicjac/ (last check:20141204185001) ScientiFig: http://sites.imagej.net/Aigouy/ (last check:20150820172346) Files not up-to-date: 1ad3be0d (LOCAL_ONLY) 20140309044642 jars/jpedalSTD.jar 139709e3 (LOCAL_ONLY) 20150225214259 luts/Daniela Weka.lut 1fede087 (LOCAL_ONLY) 20150210121833 luts/parula.lut ea8eaa80 (LOCAL_ONLY) 20150915171055 luts/viridis.lut 49b0a061 (LOCAL_ONLY) 20130802090211 macros/AutoRun/install-shortcuts.ijm ccd43dcf (LOCAL_ONLY) 20150817093540 macros/BatchMacro.ijm 294c307e (LOCAL_ONLY) 20150716131813 macros/my-shortcuts.ijm fc1bd165 (LOCAL_ONLY) 20150716122321 macros/peakFinder.ijm cb6970ee (LOCAL_ONLY) 20131204183807 macros/toolsets/LineAndProfileTool.txt 6264ce63 (LOCAL_ONLY) 20111115185109 macros/toolsets/Magic_Montage.txt 5c7af901 (LOCAL_ONLY) 20130625111729 macros/toolsets/ROI Manager Tools.txt 86da5566 (LOCAL_ONLY) 20141204153129 plugins/Align_4.class 1d36a2a2 (LOCAL_ONLY) 20150331095453 plugins/Barnhill_IJ_Toolkit.jar 077159f3 (LOCAL_ONLY) 20150820111033 plugins/Image_Stabilizer.class 55624188 (LOCAL_ONLY) 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