I use the built-in macro function "getDirectory" for getting information about where the images to be analyzed are located and this the line of code:

Folder = getDirectory("Choose the folder where your images are located");

This used to work beautifully, but since I upgraded my computer to Mac OS X El Capitan (10.11.1) I no longer get the title text displayed. It still works without any error messages, and the parameter "Folder" will have the correct path information. But if you don't know how the macro works you might not know that you should choose a folder and not a particular image file when the title text is not displayed in the file open dialog. 

Best regards, Maria

Information about your version of Java:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.11.1
  java.version => 1.8.0_65
  java.vendor => Oracle Corporation
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.8.0_65-b17
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 25.65-b01
  java.vm.vendor => Oracle Corporation
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.8
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
  imagej.dir => /Applications/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20151113184007)
Fiji: http://update.fiji.sc/ (last check:20151116160618)
Cookbook: http://sites.imagej.net/Cookbook/ (last check:20150302230629)

Files not up-to-date:
  1ad3be0d (LOCAL_ONLY) 20130916134834 jars/jpedalSTD.jar
  17a61cfe (LOCAL_ONLY) 20140414082520 luts/LUTforPSFs.lut
  e16a9947 (LOCAL_ONLY) 20151105101211 macros/ConfocalCheck_Configuration.txt
  657e41f0 (LOCAL_ONLY) 20151105120144 macros/ConfocalCheck_Configuration_CCI.txt
  0178a8c4 (LOCAL_ONLY) 20141218175518 macros/GerminalCenters/GerminalCenters_Auto.ijm
  cad95d89 (LOCAL_ONLY) 20141218182436 macros/GerminalCenters/GerminalCenters_Manual.ijm
  32698127 (LOCAL_ONLY) 20140225121418 macros/LSM_to_tif.ijm
  35612cc7 (LOCAL_ONLY) 20140225153117 macros/LSM_to_tif_batch.ijm
  7c98884b (LOCAL_ONLY) 20151112100753 macros/Macro_ConfocalCheck.txt
  78c71246 (LOCAL_ONLY) 20151110101705 macros/Macro_ConfocalCheck3.txt
  3844a1d3 (LOCAL_ONLY) 20140424144746 macros/SegmentingBF.ijm
  72a2332c (LOCAL_ONLY) 20131122140448 macros/String_functions.ijm
  478e4984 (LOCAL_ONLY) 20150116122150 macros/Temp.ijm
  8914d885 (LOCAL_ONLY) 20130913155625 macros/print_out.ijm
  715479e1 (LOCAL_ONLY) 20110809105554 plugins/ESnake/ESnake_.jar
  343514cc (LOCAL_ONLY) 20090612173442 plugins/ESnake/big.jar
  06f2969a (LOCAL_ONLY) 20141218185236 plugins/GerminalCenters/GerminalCenters_Auto.ijm
  895bced4 (LOCAL_ONLY) 20141218185239 plugins/GerminalCenters/GerminalCenters_Manual.ijm
  8decef3a (LOCAL_ONLY) 20150122082317 plugins/GerminalCenters/GerminalCenters_Manual_12.ijm
  7b429a2b (LOCAL_ONLY) 20150226140643 plugins/GerminalCenters/GerminalCenters_Manual_121.ijm
  23ec1e24 (LOCAL_ONLY) 20150228220832 plugins/GerminalCenters/GerminalCenters_Manual_121_1.ijm
  36c254ab (LOCAL_ONLY) 20150306100230 plugins/GerminalCenters/GerminalCenters_Manual_13.ijm
  aec11a4f (LOCAL_ONLY) 20150306091630 plugins/GerminalCenters/GerminalCenters_Manual_13_1.ijm
  0500dfb7 (LOCAL_ONLY) 20150306090225 plugins/GerminalCenters/GerminalCenters_Manual_13_works_notCleaned.ijm
  38b5979e (LOCAL_ONLY) 20150318213909 plugins/GerminalCenters/GerminalCenters_Manual_14.ijm
  3a5d06e4 (LOCAL_ONLY) 20150318213712 plugins/GerminalCenters/GerminalCenters_Manual_141.ijm
  e4d51aa9 (LOCAL_ONLY) 20150318195831 plugins/GerminalCenters/GerminalCenters_Manual_14_NoBatch.ijm
  59229ecf (LOCAL_ONLY) 20131023100732 plugins/Jay_Plugins.jar
  2d3e3152 (LOCAL_ONLY) 20140414082520 plugins/MIPs for PSFs all microscopes_V2_.ijm
  ca04a800 (LOCAL_ONLY) 20131004121234 plugins/Mosaic_ToolSuite.jar
  5d5c332f (LOCAL_ONLY) 20140701124746 plugins/ScanR_CellTracking/CombineScanR_singleChannel.ijm
  1f7972bd (LOCAL_ONLY) 20131126090543 plugins/ScanR_CellTracking/Track_Cells.ijm
  b1dfb0eb (LOCAL_ONLY) 20131211143237 plugins/ScanR_CellTracking/Track_cells_AnalyzeTracks.ijm
  cc688631 (LOCAL_ONLY) 20110516173259 plugins/metroloj_.jar