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Bug 1241 - ClearVolume cannot be opened
ClearVolume cannot be opened
Status: NEW
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Windows
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2016-03-08 20:32 CST by liangyi chen
Modified: 2016-03-08 20:32 CST
1 user (show)

See Also:
Description liangyi chen 2016-03-08 20:32:19 CST 
Here is the bug report

(Fiji Is Just) ImageJ 2.0.0-rc-43/1.50g; Java 1.6.0_24 [64-bit]; Windows 7 6.1; 45MB of 15000MB (<1%)
 
java.lang.NullPointerException
	at net.imagej.legacy.LegacyService.runLegacyCompatibleCommand(LegacyService.java:270)
	at net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:161)
	at ij.IJ.runPlugIn(IJ.java)
	at ij.Executer.runCommand(Executer.java:137)
	at ij.Executer.run(Executer.java:66)
	at java.lang.Thread.run(Thread.java:662)

Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: CHECK_TURNED_OFF

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: C:\Users\ADMINI~1\Desktop\FIJI-W~1\Fiji.app/java/win64/jdk1.6.0_24//jre
  imagej.dir => C:\Users\ADMINI~1\Desktop\FIJI-W~1\Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20160217230804)
Fiji: http://update.fiji.sc/ (last check:20160218215537)
3D ImageJ Suite: http://sites.imagej.net/Tboudier/ (last check:20160302122848)
BAR: http://sites.imagej.net/Tiago/ (last check:20160302222618)
Biomedgroup: http://sites.imagej.net/Biomedgroup/ (last check:20160222231815)
BioVoxxel: http://sites.imagej.net/BioVoxxel/ (last check:20160201012112)
CellMotility: http://sites.imagej.net/CellMotility/ (last check:20160305002413)
Cookbook: http://sites.imagej.net/Cookbook/ (last check:20150303060629)
ClearVolume: http://sites.imagej.net/ClearVolume/ (last check:20160210171043)
CMP-BIA tools: http://sites.imagej.net/CMP-BIA/ (last check:20140423223817)
CSIM Laboratory: http://sites.imagej.net/Acsenrafilho/ (last check:20150318002432)
DiameterJ: http://sites.imagej.net/DiameterJ/ (last check:20150924020020)
Fuzzy logic and artificial neural networks image processing toolbox for ImageJ: http://sites.imagej.net/Astartes91/ (last check:20150906223706)
GDSC: http://sites.imagej.net/GDSC/ (last check:20160302012351)
GDSC-SMLM: http://sites.imagej.net/GDSC-SMLM/ (last check:20160204045708)
IBMP-CNRS: http://sites.imagej.net/Mutterer/ (last check:20160209202947)
ImageJ-ITK: http://sites.imagej.net/ImageJ-ITK/ (last check:20150910233835)
ImageJ-MATLAB: http://sites.imagej.net/MATLAB/ (last check:20151013002000)
ImageScience: http://sites.imagej.net/ImageScience/ (last check:20160109213315)
IMCF Uni Basel: http://sites.imagej.net/UniBas-IMCF/ (last check:20151008231420)
LLTT: http://sites.imagej.net/Alex-krull/ (last check:20141019001721)
MaMuT: http://sites.imagej.net/MaMuT/ (last check:20151023173614)
MiToBo: http://sites.imagej.net/MiToBo/ (last check:20150924201119)
Morphology: http://sites.imagej.net/Landini/ (last check:20140723225558)
MOSAIC ToolSuite: http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/ (last check:20160105215554)
MS-ECS-2D: http://sites.imagej.net/MS-ECS-2D/ (last check:20160204234049)
MIST: http://sites.imagej.net/NIST-ISG-MIST/ (last check:20160121025630)
NucleusJ: http://sites.imagej.net/PouletAxel/ (last check:20141101173602)
OMERO 5.1: http://sites.imagej.net/OMERO-5.1/ (last check:20151009003318)
ResultsToExcel: http://sites.imagej.net/ResultsToExcel/ (last check:20151125211931)
ScientiFig: http://sites.imagej.net/Aigouy/ (last check:20160112142758)
Slide Set: http://cellbio.emory.edu/bnanes/slideset/update/ (last check:20150917050108)
Tango: http://sites.imagej.net/Tango/ (last check:20160120115839)
Vale lab plugins: http://sites.imagej.net/Nico/ (last check:20160302031303)

Files not up-to-date:
  d4d1960a (LOCAL_ONLY) 20160309092402 lib/Win64/SimpleITKJava.dll
  f85574f3 (OBSOLETE_MODIFIED) 20160309093022 lib/Win64/setrEnv.ps1
  4dc40889 (LOCAL_ONLY) 20160309093007 lib/linux64/JavaGD.so
  5cece7ec (LOCAL_ONLY) 20160309093030 lib/linux64/SystemEnvironmentVariables.csv
  88cba225 (LOCAL_ONLY) 20160309093027 lib/linux64/configureMongoDB.sh
  9671bf1f (LOCAL_ONLY) 20160309093023 lib/linux64/installJava3D.sh
  a83a94fd (LOCAL_ONLY) 20160309093023 lib/linux64/installMongoDB.sh
  faa23114 (LOCAL_ONLY) 20160309093027 lib/linux64/installMongoDBAsAService.sh
  55ca7d91 (LOCAL_ONLY) 20160309093022 lib/linux64/installR.sh
  ea9c6553 (LOCAL_ONLY) 20160309093009 lib/linux64/libR.so
  518d9963 (LOCAL_ONLY) 20160309093007 lib/linux64/libj3dcore-ogl.so
  a210858e (LOCAL_ONLY) 20160309093009 lib/linux64/libjri.so
  fc0771f9 (LOCAL_ONLY) 20160309093027 lib/linux64/mongoStart.sh
  7f540e3b (LOCAL_ONLY) 20160309093027 lib/linux64/mongoStop.sh
  b9556531 (LOCAL_ONLY) 20160309093029 lib/linux64/runTerminal.sh
  432efeb8 (LOCAL_ONLY) 20160309093028 lib/linux64/setEnvVarFromKeyAndValue.sh
  c28ebbff (LOCAL_ONLY) 20160309093026 lib/linux64/setMongoDBEnv.sh
  6a9567db (LOCAL_ONLY) 20160309093023 lib/linux64/setREnv.sh
  b0398adb (LOCAL_ONLY) 20140212174320 plugins/DeconvolutionLab/DeconvolutionLab_.jar
  a4c91ede (LOCAL_ONLY) 20160128153610 plugins/Droplet Actions/Open as 8-bit.ijm
  07ffcc91 (LOCAL_ONLY) 20120109162356 plugins/FeatureDetector_.class
  fd001f90 (LOCAL_ONLY) 20151105104547 plugins/PureDenoise_.jar
  088c1815 (LOCAL_ONLY) 20151008173540 plugins/Running_ZProjector.class
  abe6a2ae (LOCAL_ONLY) 20120109162356 plugins/SteerableJ_.class
  1d9597be (LOCAL_ONLY) 20150618103040 plugins/TIA/TIA_Reader.jar
  203df37a (LOCAL_ONLY) 20151124085553 plugins/Time_Series_Analyzer.jar
  af09313f (LOCAL_ONLY) 20160304150806 plugins/ijtools.jar
  38b10ec9 (LOCAL_ONLY) 20160309082734 plugins/image_edge.jar
  4c0811ae (LOCAL_ONLY) 20120109163056 plugins/steerablej.jar