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Bug 252 - consistent Java3D crashes when volume rendering
consistent Java3D crashes when volume rendering
Status: RESOLVED WORKSFORME
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Linux
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2010-11-22 11:02 CST by Mark Longair
Modified: 2010-12-16 21:07 CST
1 user (show)

See Also:

Attachments
hs_err crash log (57.33 KB, text/x-log)
2010-11-22 11:04 CST, Mark Longair

Description Mark Longair 2010-11-22 11:02:41 CST 
At the moment I'm getting this crash every time I try to do a volume rendering
with the 3D viewer:

  version = 1.5
  ***** polygon with only one vertex?! *****
  
  #
  # A fatal error has been detected by the Java Runtime Environment:
  #
  #  Internal Error (vectornode.cpp:103), pid=18781, tid=140356547311376
  #  Error: ShouldNotReachHere()
  #
  # JRE version: 6.0_20-b02
  # Java VM: Java HotSpot(TM) 64-Bit Server VM (16.3-b01 mixed mode linux-amd64 )
  # An error report file with more information is saved as:
  # /home/mark/Downloads/Fiji.app/hs_err_pid18781.log
  #
  # If you would like to submit a bug report, please visit:
  #   http://java.sun.com/webapps/bugreport/crash.jsp
  #

I've tried backing up to older versions of Fiji (e.g. a couple of weeks
ago, before I started seeing this problem) but I still get the crash
even with the older versions now, so I suspect this may be due to an
Ubuntu update.  (I'm using Lucid at the moment, but recently there
were updates to xserver-common, xserver-xorg-core, so perhaps
it's due to some mismatch between them and the nVidia proprietary
drivers or something similar...)

The "Test Java3D" plugin still works, as do other examples that don't
use volume rendering, e.g. "Spheres and Tubes in 3D".

I'll attach the hs_err log.

Information about your version of Java - this information is useful for the Fiji developers:

  os.arch => amd64
  os.name => Linux
  os.version => 2.6.32-25-generic
  java.version => 1.6.0_20
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_20-b02
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 16.3-b01
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.X11GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => gnome
  file.separator => /

The up-to-date check says: You wanted never to be reminded.

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: /home/mark/Downloads/Fiji.app/java/linux-amd64/jdk1.6.0_20/jre
  fiji.dir => /home/mark/Downloads/Fiji.app

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Comment 1 Mark Longair 2010-11-22 11:04:54 CST 
Created attachment 31
hs_err crash log
Comment 2 Benjamin Schmid 2010-11-24 18:16:33 CST 
This may be the same crash which occurs on Dan's 64-bit Mac. Can you check whether the latest update fixes the problem.
Comment 3 Mark Longair 2010-12-16 21:07:53 CST 
(In reply to comment #2)
> This may be the same crash which occurs on Dan's 64-bit Mac. Can you check
> whether the latest update fixes the problem.

Updating immediately after your comment didn't fix the problem, however it has now mysteriously started working again.  I'll close the bug...