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Bug 256 - It is not possible to initiate Register Virtual Stack Slices
It is not possible to initiate Register Virtual Stack Slices
Status: RESOLVED FIXED
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
Macintosh Mac OS
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2010-11-30 23:11 CST by Nicholas Weiler
Modified: 2010-12-01 01:16 CST
1 user (show)

See Also:

Attachments
Precompiled plugin (27.67 KB, application/octet-stream)
2010-12-01 00:35 CST, Johannes Schindelin

Description Nicholas Weiler 2010-11-30 23:11:37 CST 
Following the most recent autoUpdate of FIJI, on selecting Register Virtual Stack Slices from the Plugins/Registration menu, I get the following exception:

java.lang.IncompatibleClassChangeError: class bunwarpj.trakem2.transform.CubicBSplineTransform has interface mpicbg.models.Model as super class
	at java.lang.ClassLoader.defineClass1(Native Method)
	at java.lang.ClassLoader.defineClassCond(ClassLoader.java:632)
	at java.lang.ClassLoader.defineClass(ClassLoader.java:616)
	at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
	at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
	at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
	at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
	at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:140)
	at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:132)
	at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:127)
	at java.lang.Class.getDeclaredConstructors0(Native Method)
	at java.lang.Class.privateGetDeclaredConstructors(Class.java:2389)
	at java.lang.Class.getConstructor0(Class.java:2699)
	at java.lang.Class.newInstance0(Class.java:326)
	at java.lang.Class.newInstance(Class.java:308)
	at ij.IJ.runUserPlugIn(IJ.java:181)
	at ij.IJ.runPlugIn(IJ.java:150)
	at ij.Executer.runCommand(Executer.java:124)
	at ij.Executer.run(Executer.java:61)
	at java.lang.Thread.run(Thread.java:680)


Information about your version of Java - this information is useful for the Fiji developers:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.5.8
  java.version => 1.6.0_22
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_22-b04-307-9M3263
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 17.1-b03-307
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: Up-to-date

Information about the version of each plugin:

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  1a5f4c622997d1d23f1d08c81c46b80b4da05d47 20100630161325 plugins/Skeletonize3D_.jar
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  b5a0eabcb770437c30575d4ea6f5dbd346b8bd89 20100922092416 plugins/StackReg_.jar
  e4561a55e0e167093e5551dddfcb93d8584c29cf 20100816090122 plugins/Stack_Manipulation.jar
  23cae80cce99d71dc4669da51c6909c3a7ca68ca 20100630161325 plugins/Statistical_Region_Merging.jar
  c8ca6b1805fb21baa16d2191b5aea10704c5e589 20100922092407 plugins/Stitching_.jar
  daf2ed27b7fc3ba28b43afe55d73dde5307847cb 20100107153551 plugins/Synapse_Classification.jar
  f05089fa82aca755fea1268bff7f63793692e5c8 20100630161332 plugins/Sync_Win.jar
  d8b107e55a178c768452f0e95141d732689ce8e4 20101130134659 plugins/Temporal_Color_Coder.jar
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  5e20cc0a6c833ebfdcd5fc6517eed89a44ae35dc 20100825122608 plugins/TopoJ_.jar
  388697eeea49cd689b3972077ca2d57e4e3c2eff 20100927155242 plugins/TrakEM2_.jar
  39d4aaafb0c6bea4ef6cdf95bcaf2c4665d9bdc2 20100922092408 plugins/TransformJ_.jar
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  4b7ac8f6af557234ecde194a3d9291584efd6b62 20100503164338 plugins/jacop_.jar
  f3989138cbab5258cd8d6d682f93454637060d10 20100810145810 plugins/level_sets.jar
  110647853a7eef67880e36fb7b702237e66e051d 20100922092412 plugins/loci_tools.jar
  a39a5acb2a4422f35cb4a75fd2a24aa74608ebec 20101130134655 plugins/mpicbg_.jar
  a082571fe0be7aa53efa5f94f87577aedbb78c69 20100630161331 plugins/register_virtual_stack_slices.jar
  4d7eaf239c033d305a464a06c3e64c68d096c7e1 20091014100245 plugins/registration_3d.jar
  e6e0879f5d50afa8d0dd213b4b66e396a39a47b7 20090920135221 retro/backport-util-concurrent-3.1.jar
  e250f0c40b768e90ed7d3910d9869075f3e438cd 20090920135221 retro/retrotranslator-runtime-1.2.7.jar
  eea1390da8fac38763ed4c03f1acb3342b942717 20090920135221 retro/retrotranslator-transformer-1.2.7.jar
  d326018044a582f5106efc6fc90ad09f98a6a822 20090920135221 scripts/Record_Desktop.py
  0ea7f8fc6683e74065ae7fd82c1b92676e069526 20090920135221 scripts/Record_Window.py
Comment 1 Johannes Schindelin 2010-12-01 00:35:34 CST 
Created attachment 36
Precompiled plugin

Could you please follow http://pacific.mpi-cbg.de/Installing_3rd_party_plugins and test whether things start to work again?
Comment 2 Johannes Schindelin 2010-12-01 01:16:32 CST 
I tested it locally now. It works fine here.