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Bug 314 - 3D Viewer hangs Fiji when rendering an empty stack
3D Viewer hangs Fiji when rendering an empty stack
Status: RESOLVED MOVED
Product: Fiji
Classification: Unclassified
Component: 3D Viewer
unspecified
PC Linux
: P4 normal
Assigned To: Benjamin Schmid
Depends on:
Blocks:
 
Reported: 2011-05-17 17:10 CDT by Mark Longair
Modified: 2014-06-16 13:50 CDT
2 users (show)

See Also:

Description Mark Longair 2011-05-17 17:10:58 CDT
You can reproduce this with the following steps:

* Go to File -> New and create an 8-bit stack, 200x200x10, filled with black
* Run Plugins -> 3D Viewer, and leave the options at their defaults

Then I see about 6 CPUs maxing out for about 20 seconds, then just a single CPU is at 100% and Fiji becomes unresponsive, and I have to kill it with SIGKILL.  Adding a single blob of non-zero pixels in the image stops this from happening.

It's useful to be able to test with empty images sometimes - for example, people often send me .traces files for SNT without the images, so it's easiest to construct an empty image of the right size to work with.

Information about your version of Java - this information is useful for the Fiji developers:

  os.arch => amd64
  os.name => Linux
  os.version => 2.6.32-31-generic
  java.version => 1.6.0_20
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_20-b02
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 16.3-b01
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.X11GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => gnome
  file.separator => /

The up-to-date check says: You wanted never to be reminded.

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: /home/mark/Downloads/Fiji.app/java/linux-amd64/jdk1.6.0_20/jre
  fiji.dir => /home/mark/Downloads/Fiji.app

Information about the version of each plugin:

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Comment 1 Curtis Rueden 2014-06-16 13:50:21 CDT
Migrated to https://github.com/fiji/3D_Viewer/issues/3