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Bug 349 - Erode/Dilate buggy for stacks
Erode/Dilate buggy for stacks
Status: RESOLVED FIXED
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
Macintosh Mac OS
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2011-08-15 21:29 CDT by Matt Wyczalkowski
Modified: 2011-10-20 01:07 CDT
1 user (show)

See Also:

Description Matt Wyczalkowski 2011-08-15 21:29:37 CDT
I am having problems with the Erode and Dilate functions (Process->Binary menu) when working with image stacks (acquired with Import->Stack from list...).  Specifically, when performing the Erode function on the entire stack, certain individual frames appear to have the Dilate functionality applied; the opposite happens as well, so that some frames get Eroded when Dilate is applied to the entire stack.

This behavior is not reproducible --  the bad frames seem to be random -- but in a stack of 100 frames, typically 2-5 will have this problem.

Information about your version of Java - this information is useful for the Fiji developers:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.6.8
  java.version => 1.6.0_26
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_26-b03-384-10M3425
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.1-b02-384
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: null

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
  fiji.dir => /Applications/Fiji.app

Information about the version of each plugin:

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Comment 1 G. Landini 2011-08-18 13:18:35 CDT
I tried 1000 slices 512 x 512 erode, dilate, erode and can't reproduce under linux.
I wonder if your images are very large and there is some delay/race issue,

Your report says:
The up-to-date check says: null

Can I suggest to update fiji and create a macro that shows the problem?
For example create 1000 images create a roi, fill it to all the slices and erode them, then prject the maximum and the minimu and operate a difference between those 2 results. If the result it is empty, there is no problem.
Comment 2 Johannes Schindelin 2011-10-20 01:07:44 CDT
Assuming that this bug is fixed, or the issue is solved some different way, I am closing this ticket.

Should the issue still be present, feel free to reopen, but please do answer Gabriel's questions.