NOTICE! This is a static HTML version of a legacy Fiji BugZilla bug.

The Fiji project now uses GitHub Issues for issue tracking.

Please file all new issues there.

Bug 368 - Upon first starting up Fiji, I keep getting an Image JA error window coming up, which I have to click 'ok' on to remove the error window, before proceeding to use Fiji.
Upon first starting up Fiji, I keep getting an Image JA error window coming u...
Status: CLOSED FIXED
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Windows
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2011-10-12 13:20 CDT by John Classey
Modified: 2011-10-12 15:56 CDT
1 user (show)

See Also:

Description John Classey 2011-10-12 13:20:37 CDT
Image JA error window reproduced below:

Plugin configuration error: C\PROGRA#1\Fiji.app\plugins\Colour_Deconvolution.jar
    Duplicate command: "Colour Deconvolution", Colour_Deconvolution

Plugin configuration error: C\PROGRA#1\Fiji.app\plugins\Threshold_Colour.jar
    Duplicate command: "RGBtoLab ", RGBtoLAb_
    Duplicate command: "RGBtoYUV", RGBtoYUV_


Information about your version of Java - this information is useful for the Fiji developers:

  os.arch => x86
  os.name => Windows XP
  os.version => 5.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) Client VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: Up-to-date

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: C:\PROGRA~1\Fiji.app/java/win32/jdk1.6.0_24/jre
  fiji.dir => C:\PROGRA~1\Fiji.app

Information about the version of each plugin:

  2e2599f96977f59848f92519d8fc79320e672607 20110818133739 fiji-win32.exe
  1faaeed6d4934d8a46c051d1bfda65fc5c75e20e 20110729124807 images/icon-flat.png
  a02d5340c301b7c681bea6bec2bfa822bf05ccf8 20110307142000 images/icon.png
  18f2225de840c1e5a184385d59e5efd2499798aa 20110818133746 jars/Fiji.jar
  31fc72943db1de218eb827e7ea3becc16d76d851 20110307142000 jars/Jama-1.0.2.jar
  73f114e6f8cd0c40b4a4e2d0048f6299ffcdb971 20110913162253 jars/VIB-lib.jar
  bd57338068f48b9ce4c5275544633ba172b0902a 20110307142000 jars/VectorString.jar
  68a9e41d2a7cec1ffedd5e38f4c064927b43b3c7 20110307142000 jars/ant-junit.jar
  4199e18036ba2020bdcbc733f603564f41cf9009 20110307142000 jars/ant-launcher.jar
  92b2335d3a97549b633dbcc3c41381a90f2b924b 20110307142000 jars/ant-nodeps.jar
  b1492f77c5c13e4f9dc05fe0ba9f95d6ec826660 20110307142000 jars/ant.jar
  5bab776822719667a604b8fb2eafc679161aeb0f 20110307142000 jars/autocomplete.jar
  dbab80ab5e11fb33328c7da88a849d0a19793ff5 20110307142000 jars/batik.jar
  d21bc3c19ebc5b3924caff5f859e6c50071590c9 20110307142000 jars/bsh-2.0b4.jar
  efd0b4a7eaf55c0716fde3243ac45cb49fdd2606 20110307142000 jars/clibwrapper_jiio.jar
  9963461cfa1f078539b5c0ed0cc0553b4d5e30ec 20111004122926 jars/clojure.jar
  633579fc096732b7acaaf3489f4e2c04de1b7ed0 20110912122953 jars/commons-math.jar
  368901ce572a723c0ae0e68f0563b2712a69fd5d 20110307142000 jars/edu_mines_jtk.jar
  60cc27efc9ad52e4ff51b328b465831232eefd12 20111010120304 jars/fake.jar
  86e668e09ca776a96a21859e7f803785a3a33d89 20111010120304 jars/fiji-lib.jar
  c06d6da175e7977eb53e38b00ddfcd10c3a4d20f 20110729124751 jars/fiji-scripting.jar
  e462e7ae14322e4a77091a5ffe2d64d1fa203187 20111005162115 jars/ij.jar
  04530e150af0702f6f963104facda5eaa6e866ae 20110307142000 jars/imagescience.jar
  780fae4087869e6c485796fd6df1e399e64fc44e 20110307142000 jars/imageware.jar
  58b4d0e0ee6d734f62b6f2d8572e64d5b7dc7aba 20111010120306 jars/imglib-algorithms.jar
  783041f5d3b83a43f43c33e265f7626195dfd667 20111010120306 jars/imglib-ij.jar
  0d77e56473bdb66e31c55feb7781a29b2a9af3c2 20111010120306 jars/imglib-io.jar
  4053be284a4fd91bfddc9e512ddc6366b2dc6f11 20110307142000 jars/imglib-scripting.jar
  daefbf7cae0bd397f4985ae56b40f92c008bda42 20110729124805 jars/imglib.jar
  42960fce1f1d972e969356deeaf24f4327e4ba01 20111004122939 jars/imglib2-ij.jar
  2b1970dbce13bc23be1ebacbb9b9420bd0a4370c 20111004122938 jars/imglib2-io.jar
  da0b6ae4ec7f67b0312da23f6e8bd52209392373 20111004122938 jars/imglib2-ui.jar
  7ca1b21dab36764f1fdee3ee6b94bcda23eb8abb 20111004122939 jars/imglib2.jar
  9768d24a942a92c6981c719b3157429569806384 20110815143325 jars/itextpdf-5.1.1.jar
  1d98f5251cb21553b4907228cd281e6b84d3a216 20110307142000 jars/jacl.jar
  253316728c4012a86fae361e7b7fcb0fab0f5c38 20110307142000 jars/jai_codec.jar
  2a328b6b63ebec85d369427875739304dc1cf2cb 20110307142000 jars/jai_core.jar
  80b8e588bbdba61cf76f1f7b218a0387a6691ab3 20110307142000 jars/javac.jar
  5000664ee8b54ad75a72da627ab7665ca422f10b 20110307142000 jars/jcommon-1.0.12.jar
  166036abb16a0b57c7f7c0a0e0e610ef72b48746 20110307142000 jars/jep.jar
  ca45b966d92e07a3bcea6be98cbab05ea0d4e1ba 20110307142000 jars/jfreechart-1.0.13.jar
  925d65018db8d43d79f3e1236c0178805f68c488 20110307142000 jars/jna.jar
  63e9057128a2096b3787c4c784a5b6dab862264d 20110307142000 jars/jpedalSTD.jar
  b904075730a195dff53e602e836e6ced7b438257 20110307142000 jars/jruby.jar
  108412260f226609c8161f6e831119f47e6d9380 20110307142000 jars/js.jar
  8ac2d354cd5af826d9982c5b8fd9b32fc108d0bd 20110729124807 jars/jsch-0.1.44.jar
  8e9a4bd810c0d4c6cc42df2e974373c24f3b4372 20110307142000 jars/junit-4.5.jar
  d6edc3bbc639248e808f4cc0e372cfa249320016 20110307142000 jars/jython.jar
  a21f73a79260a9098df7eabf10982ab9ff2d9efe 20110307142000 jars/jzlib-1.0.7.jar
  ae776ee76c169400650847991e70e528bc7c6037 20110729124807 jars/mij.jar
  b7fa988a7b79e635a69eaaca77ffc57369c3b13a 20111010120305 jars/mpicbg.jar
  e008825954f9c01c5e3b3fa0004caa7535a45423 20110307142000 jars/pal-optimization.jar
  5cc5e4e537c2c5824beadcb03b7a1d6805e3a42f 20110307142000 jars/postgresql-8.2-506.jdbc3.jar
  b1bdf4b6b3e47ac5edb3d9ec8273401f6e8f64a3 20110307142000 jars/rsyntaxtextarea.jar
  7d5ba6c535ddd4557ca46698f08262348eeb072c 20110307142000 jars/wavelets.jar
  fc6c0417408aa74faaf4769e70ed4f8b55d0ea87 20111010120306 jars/weave_jy2java.jar
  62509dafa2ad38e0e3c34c538f6d3da1e25971ce 20110307142000 jars/weka.jar
  c432f64b204f9657354de2010b24535670e3073b 20110307142000 luts/16_colors.lut
  89419f9999bc7d1dc09ad1a66e04e819396fe09f 20110307142000 luts/5_ramps.lut
  dc3a1bdd2b34edec84c29affaded489d0a22601d 20110307142000 luts/6_shades.lut
  0b3bbb6cf86adcb697c53c0277a12140966375dc 20110307142000 luts/Cyan Hot.lut
  655b55e6322c870632e5ff3156f002c0f5b893fe 20110307142000 luts/Green Fire Blue.lut
  2918f6d391ee38a4491163c30b4e75256a6633e7 20110307142000 luts/HiLo.lut
  a3312d3ff046120cccf5adcd400c512f78d18f93 20110307142000 luts/ICA.lut
  db5bf8a4e880d787d88f3273caf3db7ae6a5974f 20110307142000 luts/ICA2.lut
  9f7dd167f698970549ec20aa7d26b221ae7928f8 20110307142000 luts/ICA3.lut
  697dd3a4daf4abcd05cc4a79af3bcb3364fd0bb0 20110307142000 luts/Magenta Hot.lut
  524604de124b812940b02541a63516c84621237b 20110307142000 luts/Orange Hot.lut
  9c9a56c239e5d9c3262ace5124fff406cb3b831d 20110307142000 luts/Rainbow RGB.lut
  4e686ec669057c7de78497720bf52ebe00c3f8da 20110307142000 luts/Red Hot.lut
  2fdb7c96583f42348cd5cc789fba38dd6e349c89 20110307142000 luts/Thermal.lut
  321574916ccee56861ca6d581f6915cff5fe80e1 20110307142000 luts/Yellow Hot.lut
  a4cec22b96c306321ba4c7b3ff30df9fa7919616 20110307142000 luts/blue_orange_icb.lut
  c9e396a3f83ee8cebf1ed28d3e2d53296cc908e7 20110307142000 luts/brgbcmyw.lut
  60f85e63ba9a31fbb769ab32c75c22883df22883 20110307142000 luts/cool.lut
  ba88e5f3db79551a10b7bed5c2517b33cea57dda 20110307142000 luts/edges.lut
  0a4dce83c72986c06356ecbab98747c30c9366ad 20110307142000 luts/gem.lut
  c616e76585643c232c743e16358d68e4dfe24620 20110307142000 luts/glasbey.lut
  1f99f07ea5760dd8c044639b02da116112a2b985 20110307142000 luts/phase.lut
  52a3c3995ef92bc35eb4e691848af5351be589e4 20110307142000 luts/physics.lut
  49f5e48a355fe0646cd99bf7b371afb7c603def8 20110307142000 luts/royal.lut
  898954dd1342741de1cd48e7c581b6ec0f0cbff2 20110307142000 luts/sepia.lut
  ebd4ed6b0fd5375bd4d143134da5692253d4d44a 20110307142000 luts/smart.lut
  36e7ca9e01240243fb69ea5da21655608d6b5ef8 20110307142000 luts/thal.lut
  940b38f9db4fbe78ccd66222a08b28d1ae98ba04 20110307142000 luts/thallium.lut
  172436819bfde39bcf02fc8b41735f0c20db2ad1 20110307142000 luts/unionjack.lut
  a97e1da9c67b6764787b27473bbdb4a21d68292b 20110307142000 macros/listManagement.txt
  1785bbbf1033afe28da411beb5c2efea6bab1186 20110307142000 macros/toolsets/Clear Custom Tools.txt
  54200f47f8a6d5a131a7d9d65d7fcb75d53f97ae 20110307142000 macros/toolsets/Drawing Tools.txt
  9bd39ac4d51a3fa9ed4c85b78fac065b2aa6b201 20110729124807 macros/toolsets/Lookup Tables.txt
  f7efa1b3ca937510748f52b79ce283c1342d2012 20110307142000 misc/headless.jar
  8dee3846e4ca1a0ad4169cf5e4859bcf52b878af 20110729124807 plugins/3D_Blob_Segmentation.jar
  fa47c405e684e4a9fa699507c2f9605c17d6fc02 20110307142000 plugins/3D_Objects_Counter.jar
  cb49aff5dd9863f7f3e489f37d2662adbbad5174 20111010120305 plugins/3D_Viewer.jar
  68175df528f66e558b40d41867aa3539f55518bd 20110307142000 plugins/Algorithm_Launcher.jar
  9274f3373b27930ae5e6f3d1f88674f64110e970 20110307142000 plugins/Analyze/Dynamic_ROI_Profiler.clj
  7acae667f3873c3f47eb0fbf1d6b5f0718a5a1f9 20110307142000 plugins/Analyze/Measure_RGB.txt
  2c4b555500dcd2a25700e1c1445a3d5ae87c1c8a 20111004122926 plugins/AnalyzeSkeleton_.jar
  57e92445bb3feda9d1ffe6e6d4a682b70d2d0ed9 20110307142000 plugins/Analyze_Reader_Writer.jar
  abe815e897d0bf5e97a29cec0b6af47df8a5ec35 20110729124806 plugins/Anisotropic_Diffusion_2D.jar
  54cd4a1066d31573ce3181c08565f8ede58ec3a5 20110729124751 plugins/Arrow_.jar
  6ad769a23d862c28b680d036bad02fd3c3a43799 20110729124751 plugins/Auto_Threshold.jar
  51468378eaec5b38e9afa03b73739c0dffbf523b 20110818133739 plugins/BeanShell_Interpreter.jar
  3651a154d58f245e4e920ac60de1dcb88cefe592 20110729124752 plugins/Bug_Submitter.jar
  e43ae2651743ca70a12b898b8bd7e084e2288943 20110307142000 plugins/CLI_.jar
  919ab06bdcbf59c28aeca3f340f7cd8285e29780 20110307142000 plugins/CPU_Meter.jar
  d888370a9a41fe87d542665027edc84eff31637e 20110307142000 plugins/Calculator_Plus.jar
  2dc5d027ef23416f31860dc0e158aa1b6ab9a11f 20111004122926 plugins/Clojure_Interpreter.jar
  640cdbc236e28dc837506d371de99073efab5906 20111010120303 plugins/Colocalisation_Analysis.jar
  f2f8c5c376c80df66cc1ccbcbf12babd366eda85 20110307142000 plugins/Color_Histogram.jar
  1cee26bc818eb02dafe9ad08dd437b10c412aa2b 20110307142000 plugins/Color_Inspector_3D.jar
  93b0ea589d71e420a321e485605aaa1dbf5bb0dc 20050613111840 plugins/Colour/Align_RGB_planes.class
  677253f6003940115adce80bda96911f685c5106 20050527182710 plugins/Colour/Colour_Balance.class
  e0f7a266d4cdc6fe6b84bec51df25d580c6dc976 20050512174136 plugins/Colour/Colour_Correct.class
  59cf05766aaf94d6f8c9de2c0d80a4cb8ba33c03 20051103221228 plugins/Colour/Colour_Deconvolution.class
  3740023d93eb7736ee2f8b9ad68764a1c62edaf5 20050201173722 plugins/Colour/Colour_merge.class
  e2056f6243a9b392b1d7b003f063bcfbf95027d3 20050713151032 plugins/Colour/RGB_Gray_Merge.class
  2b5f51fc997fbbd9cbe16448c5c7b0ea76426a63 20050512170626 plugins/Colour/RGB_Measure.class
  d69a8b32bee10dff231b08ffcfb30c07fd0e2a9b 20070620143402 plugins/Colour/RGB_Measure_Plus.class
  24fb144fe5b7b4f586f60614e0b439658f5c1d9b 20040408181504 plugins/Colour/RGB_Profiler.class
  1be34089f99f939fd763bca5231aae91ec486dcf 20070619163934 plugins/Colour/RGB_Recolor.class
  ad1096954a6ceecc21d66a0990e7bac075110ede 20050617141456 plugins/Colour/RGB_to_Montage.class
  36b03395f2dc35ac85c95d011a252708a85f3bf2 20070620144132 plugins/Colour/RGBtoLab_.class
  f11ffc4515858e220f9cd0590464abff1f4e07c9 20060502092450 plugins/Colour/RGBtoYUV_.class
  1fa8c616c1ad429c84e38f526ccadd584e87ff65 20050527180332 plugins/Colour/Resize2Rotate_.txt
  35307eeacde652277732268dd1754641284a326d 20070620111812 plugins/Colour/rgb_measure_plus.txt
  74b442ad599bb17b5435bcc8ce3acf3016340208 20111004122938 plugins/Colour_Deconvolution.jar
  9103f2a4a1eab68fc5eedc0d897a2c051907ef4d 20111004122938 plugins/Dichromacy_.jar
  b73a16189c15d0e5f59d0b9da7d9dafc19177379 20110307142000 plugins/Differentials_.jar
  b2ef2c55503e2a4b036a97c5576afa723a119ecb 20110729124804 plugins/Directionality_.jar
  83caa3dfc56cba0ff2a4ec8a2532dd674784d356 20110307142000 plugins/Examples/Add_Popup_Split_Channels.bsh
  f6fcfac7beaaf48901cf57d1dd5a9232d6e43570 20110307142000 plugins/Examples/Anaglyph_for_Red_Cyan_glasses.rb
  5dcd79ab303b72dbd5540b604bd30ce0e2a5ddcb 20110307142000 plugins/Examples/Blobs_Demo_in_Ruby.rb
  73eff73688cbf8356485d4dac6fe2b26db598e93 20110307142000 plugins/Examples/Command_Launchers/Command_Launcher_BeanShell.bsh
  95549b2f2f2c42a8bf5bb5f6d18f58d25c4c06cc 20110307142000 plugins/Examples/Command_Launchers/Command_Launcher_Clojure.clj
  dceba709afa80f33ae5d0091f5811b32610e1fd0 20110307142000 plugins/Examples/Command_Launchers/Command_Launcher_Javascript.js
  e4954eacd4b1b679813c4227563996121f7e6d98 20110307142000 plugins/Examples/Command_Launchers/Command_Launcher_Python.py
  f51112123ed16a9ff9c0cf5002dea3804731a8cb 20110307142000 plugins/Examples/Command_Launchers/Command_Launcher_Ruby.rb
  77c7bef5e629a85ae8b037caf2377cb6772f59df 20110307142000 plugins/Examples/Delayed_Snapshot.py
  5536e038a497982f3e10d924849c4ffe6c4fdd3c 20110307142000 plugins/Examples/Delayed_Snapshot_Window.bsh
  4164c08c7ef62e27e731d45643a1cbe10098fce1 20110307142000 plugins/Examples/Edit_LUT_As_Text.py
  780e948e100ffc6bfcd5583146752eff86671b39 20110307142000 plugins/Examples/Extended_Profile_Plot.bsh
  b8881af27131bb518e2c8f45510811963f091e21 20110307142000 plugins/Examples/Fiji_Cube.ijm
  3687a018e780919fc238a411c0d76607060ae47f 20110307142000 plugins/Examples/Fiji_Logo_3D.js
  998cb71706d82992543115b6ad1b85f7d199d096 20110307142000 plugins/Examples/Find_Dimension_of_Raw_Image.py
  66cf50fd8cefccf7056e7dd53f946e195392d4ab 20110729124807 plugins/Examples/Image_To_Tool_Icon.bsh
  ccccc81ed242c08cf81b2c9da3f2b6d8c2e6e278 20110729124803 plugins/Examples/Multithreaded_Image_Processing.clj
  720c237bd586550b63e2d423d2e85759e045869c 20110307142000 plugins/Examples/Multithreaded_Image_Processing_in_Javascript.js
  92ce736dc63c171342bce7b382fa0450394dffc9 20110729124803 plugins/Examples/Plasma_Cloud.rb
  9efb229268bb88ae20f4b2bca157e73c0c0afbdf 20110307142000 plugins/Examples/Same_Slice_in_Multiple_Images.rb
  1b6eee3ac18ab226fb3d5151d04b38308a22d2cf 20110729124807 plugins/Examples/TrakEM2_Example_Scripts/Homogenize_Ball_Radius.py
  940f6500947184db3dfbcad055aa98c11db41c24 20110307142000 plugins/Examples/TrakEM2_Example_Scripts/Measure_AreaLists.py
  3f4bba61fc90eb79a8ade2a6399cad72ede26fb9 20110307142000 plugins/Examples/TrakEM2_Example_Scripts/T2_Select_All.py
  72f0094941e8aae9c451161f05a67f6516d70a55 20110307142000 plugins/Examples/TrakEM2_Example_Scripts/T2_set_all_transforms_to_identity.py
  89ef030758e89f6a6767ab5e3513ee82a8e54127 20110307142000 plugins/Examples/TrakEM2_Example_Scripts/extract_stack_under_arealist.py
  f8479f84ce5a282bf4f00df5bf05a3abc70f9153 20111004122936 plugins/Examples/blend_two_images.clj
  0989cf7430916a9e0c9f004bc2d5bc6b276e2775 20110307142000 plugins/Examples/celsius_to_fahrenheit.clj
  ff3b990238ad1f85e4a8aa8135e2e3b1221b43a8 20110307142000 plugins/Examples/chess_.py
  4193ae7c8fbe191bff50f19367c5cfa5e0048fbe 20110307142000 plugins/Examples/downsample_.js
  66a204d61b3076d96797ca04671180ed83ebf866 20110307142000 plugins/Examples/list_all_threads.py
  ff4099b90cb718c63d3e747fb0041356180d47cd 20111004122936 plugins/Examples/random_noise_example.clj
  e48eee8c5bedb45660ef94930f7931d0984cf606 20110729124807 plugins/Extended_Depth_Field.jar
  650f19766157bdd8d35f67ea474a57ed1b4c24f7 20110307142000 plugins/FeatureJ_.jar
  32aabe78307ac40b391428e2fd9d7c6b19eed604 20110729124807 plugins/Feature_Detection.jar
  77dbfdb93eac55cb0affb28efdac66c2ab8ee728 20110729124803 plugins/Fiji_Developer.jar
  a1b3a4213b2c41f8dbbc463531ae107c35919eab 20111010120303 plugins/Fiji_Plugins.jar
  27586999503df0ebd5fc24d52b3af76e08864f78 20110913114622 plugins/Fiji_Updater.jar
  d53247c86445afc29f991a39cb39b79f2f3fd4c1 20110307142000 plugins/FlowJ_.jar
  94559184bb4bf02414286cb9d20b95dd8806bd32 20110307142000 plugins/Graph_Cut.jar
  42556198e68860b4135544fe9e4687c9fbffbfe2 20110307142000 plugins/Gray_Morphology.jar
  e8f24a89734ea514ba6405423368a107f324fc5b 20110307142000 plugins/IJ_Robot.jar
  77c42605504adbea72b4db959edb8054e26ee1dd 20110913114634 plugins/IO_.jar
  0b192ea98d65b21fe6b89e16d99492f2bb749bf5 20110307142000 plugins/Image_5D.jar
  556aa2baca4b32676b2a5a5c986f0f2b5c44d03d 20110815143324 plugins/Image_Expression_Parser.jar
  43bb3a7b79d1fc23958a7775f407fa9567c6f67f 20110307142000 plugins/Interactive_3D_Surface_Plot.jar
  3ea0d59d5878d1eeed2f7e1796b504b28ff1818a 20110307142000 plugins/IsoData_Classifier.jar
  28582f554fdbc4905b5ca4eb192a516202b2f334 20110307142000 plugins/JRuby/imagej.rb
  6d537b584457026203446d7e15292a3118a156f2 20110729124752 plugins/JRuby_Interpreter.jar
  bf637820593d903c747894b39d6edccc482321ee 20111004122927 plugins/Javascript_.jar
  fd52fee25194a1beb29c54bb5cb31d2e9962c29f 20110906112453 plugins/John/Batch CD68 dotSlide.txt
  e2c6a8b1368f653ab3deee62813ec29ce32a6439 20110328113523 plugins/John/CD68.txt
  bc50ecb6aed0541c0e14284a6677c5efa1a0f486 20111011113927 plugins/John/CD68_batch.txt
  534d521052b7ccd67dbe4ef3807026c0413590fd 20110616164520 plugins/John/John - CFAS dotSlide Batch CD68.txt
  7c039e95cd514cf9bdf2e325122c4cdbf9fbd07d 20110307142000 plugins/Jython_Interpreter.jar
  6a089d626a3c4d6bf43ffaa1e5c0406ae3d7ff79 20110729124803 plugins/LSM_Reader.jar
  de0f4b6754561dc8a412f2d2c67ec10351f5d238 20110307142000 plugins/LSM_Toolbox.jar
  7dcbc0831ee6cec3b79e90e8b292d25b34174e54 20110307142000 plugins/Lasso_and_Blow_Tool.jar
  fe3c88710e380c7a741cbf676cf5d8144e7edb8a 20110307142000 plugins/Linear_Kuwahara.jar
  bcb926fe63b7637bd53e3602feda2166951acdec 20110307142000 plugins/LocalThickness_.jar
  1a6345a290ff4a28ac4215cbb47fc561dcc886be 20110307142000 plugins/MTrack2_.jar
  2e7c5f2d14a85c9a073074d5540aef234cb3cea5 20110307142000 plugins/M_I_P.jar
  65a2dd7816efceb28030dc0ea7cb4ad51c42e9a0 20110307142000 plugins/Macros/About_Plugin_Macros.txt
  dff5642dcb662c06fd8cd7dfce73f60a4b8b8244 20110307142000 plugins/Macros/Bulls_Eye.txt
  e7ffe8ba782ce90d3b80ad882c474ab1836b58a4 20110307142000 plugins/Macros/Polygon_.txt
  39f7ffcd9b21888b618524a811eb39c93625578d 20110307142000 plugins/Macros/RGB_Histogram.txt
  3ee0edfae7b40189254e38a6ed8108c52859bc33 20110307142000 plugins/Macros/batch_convert_any_to_tif.txt
  d0cd293b359b7bcdf390e560dc28f68fa8033677 20110307142000 plugins/Manual_Tracking.jar
  de3a020be174270600534345eb47fd76267d8080 20110307142000 plugins/MosaicJ_.jar
  d282429b4edade4bc6df44e03d239e8aab2f03a6 20110818133739 plugins/PIV_analyser.jar
  c0e6e54ff0ec7c62350f232af75c85ca7006b51f 20110307142000 plugins/PointPicker_.jar
  32d24a273fef021b079fc64f151c2436af700b30 20110307142000 plugins/QuickPALM_.jar
  174a4b19524f15ff22356cb08dbef7f4e1f550c1 20110307142000 plugins/RATS_.jar
  b1a406f658f5b62633275c8316849532a0d90797 20110307142000 plugins/RandomJ_.jar
  be7dc9f2610f46b250587480baa807da53f437e0 20111010120307 plugins/Reconstruct_Reader.jar
  0ab9e3b0886ae1aab0651865d98473295f2cc715 20110307142000 plugins/Record_Screen.jar
  fcdaed5434850ed7987ea6b67817520fd6593d06 20110818133739 plugins/Refresh_Javas.jar
  eddbc388e4a17958e02bdf5cb87f37e45957badf 20111011112514 plugins/SPIM_Registration.jar
  d8cf629d370ad131b753d8b549c3f7525c4ccbbd 20110729124806 plugins/Samples_.jar
  9345078c0b583eb29f73801c2fff13cadf7ebbb6 20111004122936 plugins/Script_Editor.jar
  c70b2e6f4dbfcd1183c3027c924069866095c940 20110307142000 plugins/Scripts/File/Open_Samples/Adelsons_Squares.ijm
  943b100eff4798a466a85a87d3cf7a94f9b9be59 20110729124807 plugins/Scripts/File/Open_Samples/Spirals_.ijm
  a3edd6db28d98349de92ec85b28c015768f782a5 20110307142000 plugins/Scripts/Image/Adjust/Scale_to_DPI.js
  209aed5232d40e0b4bcd237750383865dd07b0d3 20110307142000 plugins/Scripts/Image/Color/Set_Color_By_Wavelength.ijm
  9438c99f9d79c68efee9799a185852d434d32a7e 20110729124807 plugins/Scripts/Image/Hyperstacks/Temporal-Color_Code.ijm
  d3841c4a5d74295cd73b547aaa85961682805c83 20110307142000 plugins/Scripts/Plugins/Registration/Correct_3D_drift.py
  e7e6c262a7d9a2c9f55ac3718b7084a7945e0e2a 20110729124807 plugins/Series_Labeler.jar
  50ee8cf26b2e4bf1b9774a83d227fae873158ef8 20110307142000 plugins/SheppLogan_.jar
  10c772d4bd514be81e6a2c9d2e218a820b4975e7 20110913162253 plugins/Simple_Neurite_Tracer.jar
  265850b38137898969ca510b0cb1e5e2536f4226 20110307142000 plugins/Siox_Segmentation.jar
  1a5f4c622997d1d23f1d08c81c46b80b4da05d47 20110307142000 plugins/Skeletonize3D_.jar
  e71b5942e5343cbc3d591f249cc9f3dfc73c7e29 20110307142000 plugins/Snakuscule_.jar
  41d82921719c38520d5472a3608b79394db1b7b0 20110307142000 plugins/SplineDeformationGenerator_.jar
  b5a0eabcb770437c30575d4ea6f5dbd346b8bd89 20110307142000 plugins/StackReg_.jar
  f3ea87f06422e3ac55dd3751c2c0346bc9c43261 20110729124753 plugins/Stack_Manipulation.jar
  23cae80cce99d71dc4669da51c6909c3a7ca68ca 20110307142000 plugins/Statistical_Region_Merging.jar
  de9d8f66b1cdde3a6a276e1824d36363fcb79295 20110729124753 plugins/Stitching_.jar
  f05089fa82aca755fea1268bff7f63793692e5c8 20110307142000 plugins/Sync_Win.jar
  b60eef5d020c0e881b4bb97d1579339e1cb2a60e 20110307142000 plugins/Thread_Killer.jar
  e984a5e3af7b87b718ae82f5c5ba8b36e1665f3b 20111004122938 plugins/Threshold_Colour.jar
  f5b2c18843647be28a96a3e7d163a7f2f970921b 20110307142000 plugins/Time_Stamper.jar
  22fd045b2a57d7ed84b5dcb7b6146484143e36fc 20110307142000 plugins/ToAST_.jar
  85cde3427627d577408abbd947525da4d37bc1bd 20110729124806 plugins/TopoJ_.jar
  cca6e8dd8c49c0194865d3f35d441502e824bcd5 20111010120305 plugins/Trainable_Segmentation.jar
  c3914dc07289d62f6110885439ee8e774953bb5f 20111012120229 plugins/TrakEM2_.jar
  39d4aaafb0c6bea4ef6cdf95bcaf2c4665d9bdc2 20110307142000 plugins/TransformJ_.jar
  09868b512410628e06c7dc25a6999c7dda8cf078 20110307142000 plugins/TurboReg_.jar
  9558400db089262849c33428a77645c323390145 20110307142000 plugins/UnwarpJ_.jar
  a32dfe463fa2c8814cb0caf9079478ff4e1c44bf 20110307142000 plugins/Utilities/Close_All_Without_Saving.txt
  5cd9d3dafb073ca91582b28e8ead2bd66f496234 20111010120304 plugins/VIB_.jar
  d6cf9638dc212f49fc3d2d4e99ca7aedc78956a2 20110307142000 plugins/Video_Editing.jar
  a43c9ad3f07dbfa56be075a9ebdcfa115f6675c8 20110307142000 plugins/View5D_.jar
  b8c3af50365b12b0beb010f1c35134cbd310341a 20110307142000 plugins/Volume_Viewer.jar
  39fa825afb7b2156242faa53a7cc996fc338b14c 20110729124755 plugins/bUnwarpJ_.jar
  659ad6a335b4947eef8758b1b0cf050779430b78 20110307142000 plugins/ij-ImageIO_.jar
  1398b098bf9d094f2dbabe8e7c6ce6fdca8c05ae 20110912122952 plugins/level_sets.jar
  518007f38bbfc7178206a13b94c3f20828bbb8ae 20111005162114 plugins/loci_tools.jar
  8012067079d3b92d046ceb07a863d0a6b2983e2c 20111004122936 plugins/mpicbg_.jar
  5e32d936ba53c22ba6b70e5eee3992a361bc2ff8 20110307142000 plugins/panorama_.jar
  649c04778ed2cbab0754293a50d309ba9c82e963 20110729124802 plugins/register_virtual_stack_slices.jar
  4d7eaf239c033d305a464a06c3e64c68d096c7e1 20110307142000 plugins/registration_3d.jar
  e6e0879f5d50afa8d0dd213b4b66e396a39a47b7 20110307142100 retro/backport-util-concurrent-3.1.jar
  e250f0c40b768e90ed7d3910d9869075f3e438cd 20110307142100 retro/retrotranslator-runtime-1.2.7.jar
  eea1390da8fac38763ed4c03f1acb3342b942717 20110307142100 retro/retrotranslator-transformer-1.2.7.jar
  d7160d38a0b805381cb0c0dcedd60e197e247897 20110815143324 scripts/InstallJava3D.m
  05a92a3c3f518ec50976326bf16a8a8858af2183 20110729124807 scripts/IsJava3DInstalled.m
  089187f510dfdb884a0117bb3365a73f3536fce5 20110729124808 scripts/Matlab3DViewerDemo_1.m
  25be149fecd1f6551b9b0ad53946642db65d5a4e 20110815143324 scripts/Matlab3DViewerDemo_2.m
  815ede59a0509db35e93e51b5b46b8935917f12b 20110815143325 scripts/Matlab3DViewerDemo_3.m
  c2b2bb947e274e24ba12a7e36f53e7c486257491 20110815143324 scripts/Matlab3DViewerIntroduction.m
  3f7bbdd274c005a0c8c3fd478cc238cde358ed31 20111004122938 scripts/Miji.m
  868cd43462fefc57c310656d4b35a028f0bda4f4 20110729124807 scripts/Miji_Test.m
  d326018044a582f5106efc6fc90ad09f98a6a822 20110307142000 scripts/Record_Desktop.py
  0ea7f8fc6683e74065ae7fd82c1b92676e069526 20110307142000 scripts/Record_Window.py
  dc94c3a32b5edb3106ad7f2c7c68a852d064089a 20110729124807 scripts/bfopen.m
Comment 1 G. Landini 2011-10-12 15:06:22 CDT
Probably you have installed both the Colour Deconvolution and the Threshold Colour plugins from my site before. Now that these are included in Fiji, it detects the duplicates.
Find those (the old versions) and delete them. If this resolves it, please close this bug.
Cheers
G.
Comment 2 John Classey 2011-10-12 15:55:59 CDT
Yes that appears to have solved the problem!

Many thanks,

John

> Probably you have installed both the Colour Deconvolution and the Threshold
> Colour plugins from my site before. Now that these are included in Fiji, it
> detects the duplicates.
> Find those (the old versions) and delete them. If this resolves it, please
> close this bug.
> Cheers
> G.