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Bug 417 - Stack Histogram in FIJIs Enhance Contrast
Stack Histogram in FIJIs Enhance Contrast
Status: RESOLVED FIXED
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Windows
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2012-03-27 11:31 CDT by bigspekkiebig
Modified: 2012-04-20 23:27 CDT
1 user (show)

See Also:
Description bigspekkiebig 2012-03-27 11:31:17 CDT 
L.S.

The "Stack Histogram" function in "Enhance Contrast" does not work properly. It seems to take the single slice histogram rather than the complete stack. Note that all tickmarks are on, except for the "equalization". In ImageJ's current version, the same thing happens. In an older version, 1.43u, this problem does not yet exist.

The origin of the problem might lie in a bugfix (as of version 1.46g) for Enhance Contrast WITH histogram equalization, which has been implemented as noted here: http://imagej.1557.n6.nabble.com/Equalize-Histogram-on-whole-volume-not-working-td4373815.html

Yours sincerely,

Maarten Voorn


Information about your version of Java - this information is useful for the Fiji developers:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: Up-to-date

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: D:\Software\FIJI-W~1\Fiji.app/java/win64/jdk1.6.0_24/jre
  ij.dir => D:\Software\FIJI-W~1\Fiji.app

Information about the version of each plugin:

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Comment 1 Wayne Rasband 2012-03-27 16:09:53 CDT 
This bug is fixed in the ImageJ 1.46j daily build. You can upgrade by using the Help>Update ImageJ command and selecting "daily build" from the drop down menu.
Comment 2 Johannes Schindelin 2012-04-20 23:27:49 CDT 
Since Fiji updates ij.jar now, Fiji's IJ1 is at 1.46k, so it should have the fix.