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Bug 463 - Script Editor syntax highlighting fails with escaped colons
Script Editor syntax highlighting fails with escaped colons
Status: RESOLVED WONTFIX
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Linux
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2012-08-08 17:55 CDT by Albert Cardona
Modified: 2012-09-18 20:27 CDT
2 users (show)

See Also:

Description Albert Cardona 2012-08-08 17:55:01 CDT
For example when selecting clojure as language and using a \", which is a colon character literal, the syntax highlighting considers it a regular colon, which is wrong, resulting in all sorts of subsequent bad effects such as lack of parenthesis recognition, etc.




Information about your version of Java - this information is useful for the Fiji developers:

  os.arch => amd64
  os.name => Linux
  os.version => 3.2.0-27-generic
  java.version => 1.6.0_30
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_30-b12
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.5-b03
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.X11GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => gnome
  file.separator => /

The up-to-date check says: CHECK_TURNED_OFF

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: /home/albert/Programming/fiji/java/linux-amd64/jdk1.6.0_30/jre/
  ij.dir => /home/albert/Programming/fiji

Information about the version of each plugin:

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Comment 1 Johannes Schindelin 2012-08-09 02:35:09 CDT
If you want to fix it yourself, please have a look at https://github.com/fiji/fiji/blob/master/src-plugins/Script_Editor/fiji/scripting/ClojureTokenMaker.flex

It is no longer very straight-forward to turn that into the corresponding .java file, but still easy enough.

Unfortunately, I will not have time in the near future to work on your problem.
Comment 2 Johannes Schindelin 2012-09-18 20:27:53 CDT
Unfortunately, I won't have time to work on this issue in the foreseeable future. Since I suspect the same is true for all other developers capable of fixing the bug, I have to close this bug unfixed, unfortunately.