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Bug 481 - 3D Object counter not using mask properly
3D Object counter not using mask properly
Status: RESOLVED WORKSFORME
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
Macintosh Mac OS
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2012-09-03 19:51 CDT by Martin Machyna
Modified: 2013-07-07 09:27 CDT
2 users (show)

See Also:
Description Martin Machyna 2012-09-03 19:51:49 CDT 
I set an image as a mask for the 3D object count and it really displays only centres of masses of  the objects falling inside the masked area. But in the results table all objects including those outside the masked area are reported. I would normally expect not this to happen or at least the table should contain a column saying which objects are in the mask nd which out of mask...



Information about your version of Java - this information is useful for the Fiji developers:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.7.4
  java.version => 1.6.0_31
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_31-b04-415-11M3646
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.6-b01-415
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
  ij.dir => /Volumes/data/Users/machyna/Programs/Fiji.app

Information about the version of each plugin:

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Comment 1 Johannes Schindelin 2013-04-23 11:49:21 CDT 
I am very sorry, I really did not find time to hunt that bug down. If you still need it fixed, could you please make it as easy as possible for me to reproduce? I.e. provide small example files, preferably with a macro that triggers the bug, including an if() statement demonstrating what goes wrong?