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Bug 499 - Time Stamper does not work
Time Stamper does not work
Status: RESOLVED FIXED
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
Macintosh Mac OS
: P4 normal
Assigned To: Johannes Schindelin
Depends on:
Blocks:
 
Reported: 2012-09-20 07:47 CDT by Maté Biro
Modified: 2013-07-07 10:03 CDT
2 users (show)

See Also:
Description Maté Biro 2012-09-20 07:47:04 CDT 
I get the following error message:

java.lang.reflect.InvocationTargetException
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at ij.Command.runPlugIn(Command.java:146)
	at ij.Command.runCommand(Command.java:95)
	at ij.Executer.run(Executer.java:64)
	at java.lang.Thread.run(Thread.java:680)
Caused by: java.lang.ClassFormatError: Incompatible magic value 57151635 in class file Time_Stamper
	at java.lang.ClassLoader.defineClass1(Native Method)
	at java.lang.ClassLoader.defineClassCond(ClassLoader.java:631)
	at java.lang.ClassLoader.defineClass(ClassLoader.java:615)
	at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:141)
	at java.net.URLClassLoader.defineClass(URLClassLoader.java:283)
	at java.net.URLClassLoader.access$000(URLClassLoader.java:58)
	at java.net.URLClassLoader$1.run(URLClassLoader.java:197)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
	at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:225)
	at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:217)
	at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:212)
	at ij.IJ.runUserPlugIn(IJ.java:183)
	at ij.IJ.runPlugIn(IJ.java:152)
	... 8 more

Cheers for the help,
Maté

Information about your version of Java - this information is useful for the Fiji developers:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.7.5
  java.version => 1.6.0_35
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_35-b10-428-11M3811
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.10-b01-428
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: UP_TO_DATE

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
  ij.dir => /Applications/Fiji.app

Information about the version of each plugin:

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Comment 1 Johannes Schindelin 2012-09-20 18:27:56 CDT 
It is possible that your updater had problems receiving the complete file (network problems, server not available, etc). This is a problem we will be addressing soon, now that it is much easier to keep the updater robust and reliable (it is part of the ImageJ2 stack now).

Could you start the updater, go to Advanced Mode, search for the Time Stamper (you'll need to switch the view options to "View all files") and make sure that it is not locally modified? You can select it and then click on the "Install" button, then "Apply changes" if it is marked locally-modified.
Comment 2 Johannes Schindelin 2012-09-20 18:54:39 CDT 
Oh, and BTW you might want to change your mail address... It will stop working soon.
Comment 3 Maté Biro 2012-09-21 05:39:02 CDT 
Hey Johannes,

cheers for that, but I checked the Time Stamper was not locally modified. Nonetheless I uninstalled it and re-installed it but no luck.
I noticed that other (this time locally modified) plugins such as my Add Scale Bar tool also stopped working with the same Java error. 
It must be some Java issue... 

About the email, I don't really want to use my current work one as then it is posted in cleartext and the trawlers will pick it up and send me as much spam as I eventually got at the MPI-CBG... The email will be active until the end of 2012, I'll figure something out after that.

Cheers,
m.
Comment 4 Johannes Schindelin 2012-09-21 17:08:17 CDT 
Another thing I just noticed: you have a plugins/Time_Stamper.class file. Could you move it out of the way and try again?
Comment 5 Maté Biro 2012-09-27 04:33:26 CDT 
Hey Johannes,

sorry for the late reply.
I figured it out. 
I always repopulate Fiji with some of the older plugin groups we had in the lab (I know not great).
In these old plugin folders there often seemed to be a hidden .rsrc folder containing duplicates of the files in the parent folder. 
Fiji did not recognise them as duplicates because the folder name starts with a "." (maybe this could/should be fixed?).
Anyways, once I figured this out and got rid of the hidden folders all works fine again...
The strange thing is that they must have always been there but a recent update caused Fiji to misbehave because of them...

Anywho, thanks a lot for your time!
All the best,
m.