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Bug 571 - preinstalled plugins stop working after installing a new plugin
preinstalled plugins stop working after installing a new plugin
Status: RESOLVED WORKSFORME
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Windows
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2013-02-22 23:45 CST by Anda Cornea
Modified: 2013-04-23 12:08 CDT
2 users (show)

See Also:
Description Anda Cornea 2013-02-22 23:45:33 CST 
I installed the Transfer Labels plugin.  

Now I get error messages when I try to use LCI Bioformats to open a .lif (Leica image file), use the SIFT registration and Advanced Weka segmentation that all work perfectly until I install the new plugin.  

Information about your version of Java - this information is useful for the Fiji developers:

  os.arch => x86
  os.name => Windows XP
  os.version => 5.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) Client VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: UPDATEABLE

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: C:\DOCUME~1\corneaan\Desktop\Fiji.app/java/win32/jdk1.6.0_24/jre/
  ij.dir => C:\DOCUME~1\corneaan\Desktop\Fiji.app

Information about the version of each plugin:

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Comment 1 Anda Cornea 2013-02-23 01:08:19 CST 
I copied the Trasfer Labels macro from http://www.cleterrier.net/Macros/Transfer_Labels.txt
onto my desktop.

I opened a series of images
I created a stack
I used the Plugins/Registration/Linear Stack Alignment with SIFT.

I used the Plugins/Install Plugin and selected the Transfer Labels from its location on desktop.

I applied it to change the name of images in the stack that I had aligned.

In the next step, I tried to use the Advanced Weka segmentation, in Plugins/Segmentation, as part of my usual workflow.  This time I get an error message saying:

Plugin of class not found: "Weka_Segmentation" (java.lang.ClassNotFoundException: Weka_Segmentation)

After this, if I try to open a .lif file that normaly uses LOCI to open I get the message: File is not a supported format, a reader plugin is not available, or it was not found.  

If I close FIJI and reopen, the Trasfer Labels plugin is not present on the Plugin list and both Weka and LOCI work fine.  

If I install it again, I get the same behavour.
Comment 2 Johannes Schindelin 2013-04-23 12:08:40 CDT 
It looks to me as if you tried to install a macro rather than a plugin... even so, it works for me...