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Bug 575 - Unable to upload jar in the updater
Unable to upload jar in the updater
Status: RESOLVED FIXED
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Linux
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2013-03-05 18:31 CST by Ignacio Arganda
Modified: 2013-03-05 19:13 CST
2 users (show)

See Also:
Description Ignacio Arganda 2013-03-05 18:31:28 CST 
I'm trying to upload a new version of my plugin in the updater, but as soon as I click on "Upload it", I get the following exception (in the terminal):

[INFO] Found 11 plugins.
[INFO] Created service: org.scijava.log.StderrLogService
[INFO] Created service: org.scijava.thread.DefaultThreadService
[INFO] Created service: org.scijava.event.DefaultEventService
[INFO] Created service: org.scijava.plugin.DefaultPluginService
[ERROR] Invalid service: imagej.updater.core.DefaultUploaderService
[ERROR] java.lang.ClassCastException: imagej.updater.core.FileUploader cannot be cast to org.scijava.plugin.SciJavaPlugin
	at org.scijava.plugin.PluginInfo.createInstance(PluginInfo.java:276)
	at org.scijava.plugin.DefaultPluginService.createInstance(DefaultPluginService.java:236)
	at org.scijava.plugin.DefaultPluginService.createInstances(DefaultPluginService.java:227)
	at org.scijava.plugin.DefaultPluginService.createInstancesOfType(DefaultPluginService.java:218)
	at imagej.updater.core.DefaultUploaderService.initialize(DefaultUploaderService.java:92)
	at org.scijava.service.ServiceHelper.createService(ServiceHelper.java:201)
	at org.scijava.service.ServiceHelper.createExactService(ServiceHelper.java:157)
	at org.scijava.service.ServiceHelper.loadService(ServiceHelper.java:140)
	at org.scijava.service.ServiceHelper.loadServices(ServiceHelper.java:115)
	at org.scijava.Context.<init>(Context.java:169)
	at org.scijava.Context.<init>(Context.java:131)
	at imagej.updater.gui.UpdaterFrame.getUploaderService(UpdaterFrame.java:509)
	at imagej.updater.gui.FileTable.setFileAction(FileTable.java:364)
	at imagej.updater.gui.FileTable$FileTableModel.setValueAt(FileTable.java:462)
	at javax.swing.JTable.setValueAt(JTable.java:2710)
	at javax.swing.JTable.editingStopped(JTable.java:4712)
	at javax.swing.AbstractCellEditor.fireEditingStopped(AbstractCellEditor.java:125)
	at javax.swing.DefaultCellEditor$EditorDelegate.stopCellEditing(DefaultCellEditor.java:350)
	at javax.swing.DefaultCellEditor$3.stopCellEditing(DefaultCellEditor.java:140)
	at javax.swing.DefaultCellEditor.stopCellEditing(DefaultCellEditor.java:215)
	at javax.swing.DefaultCellEditor$EditorDelegate.actionPerformed(DefaultCellEditor.java:367)
	at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1240)
	at javax.swing.JComboBox.setSelectedItem(JComboBox.java:567)
	at javax.swing.JComboBox.setSelectedIndex(JComboBox.java:603)
	at javax.swing.plaf.basic.BasicComboPopup$Handler.mouseReleased(BasicComboPopup.java:817)
	at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:273)
	at java.awt.Component.processMouseEvent(Component.java:6289)
	at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
	at javax.swing.plaf.basic.BasicComboPopup$1.processMouseEvent(BasicComboPopup.java:481)
	at java.awt.Component.processEvent(Component.java:6054)
	at java.awt.Container.processEvent(Container.java:2041)
	at java.awt.Component.dispatchEventImpl(Component.java:4652)
	at java.awt.Container.dispatchEventImpl(Container.java:2099)
	at java.awt.Component.dispatchEvent(Component.java:4482)
	at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
	at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
	at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
	at java.awt.Container.dispatchEventImpl(Container.java:2085)
	at java.awt.Window.dispatchEventImpl(Window.java:2478)
	at java.awt.Component.dispatchEvent(Component.java:4482)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
	at java.awt.EventQueue.access$000(EventQueue.java:85)
	at java.awt.EventQueue$1.run(EventQueue.java:603)
	at java.awt.EventQueue$1.run(EventQueue.java:601)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
	at java.awt.EventQueue$2.run(EventQueue.java:617)
	at java.awt.EventQueue$2.run(EventQueue.java:615)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
log4j:WARN No appenders could be found for logger (org.bushe.swing.event.EventService).
log4j:WARN Please initialize the log4j system properly.
[ERROR] Uncaught exception in thread Thread[AWT-EventQueue-0,6,main]
[ERROR] java.lang.NullPointerException
	at imagej.updater.gui.FileTable.setFileAction(FileTable.java:364)
	at imagej.updater.gui.FileTable$FileTableModel.setValueAt(FileTable.java:462)
	at javax.swing.JTable.setValueAt(JTable.java:2710)
	at javax.swing.JTable.editingStopped(JTable.java:4712)
	at javax.swing.AbstractCellEditor.fireEditingStopped(AbstractCellEditor.java:125)
	at javax.swing.DefaultCellEditor$EditorDelegate.stopCellEditing(DefaultCellEditor.java:350)
	at javax.swing.DefaultCellEditor$3.stopCellEditing(DefaultCellEditor.java:140)
	at javax.swing.DefaultCellEditor.stopCellEditing(DefaultCellEditor.java:215)
	at javax.swing.DefaultCellEditor$EditorDelegate.actionPerformed(DefaultCellEditor.java:367)
	at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1240)
	at javax.swing.JComboBox.setSelectedItem(JComboBox.java:567)
	at javax.swing.JComboBox.setSelectedIndex(JComboBox.java:603)
	at javax.swing.plaf.basic.BasicComboPopup$Handler.mouseReleased(BasicComboPopup.java:817)
	at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:273)
	at java.awt.Component.processMouseEvent(Component.java:6289)
	at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
	at javax.swing.plaf.basic.BasicComboPopup$1.processMouseEvent(BasicComboPopup.java:481)
	at java.awt.Component.processEvent(Component.java:6054)
	at java.awt.Container.processEvent(Container.java:2041)
	at java.awt.Component.dispatchEventImpl(Component.java:4652)
	at java.awt.Container.dispatchEventImpl(Container.java:2099)
	at java.awt.Component.dispatchEvent(Component.java:4482)
	at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
	at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
	at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
	at java.awt.Container.dispatchEventImpl(Container.java:2085)
	at java.awt.Window.dispatchEventImpl(Window.java:2478)
	at java.awt.Component.dispatchEvent(Component.java:4482)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:644)
	at java.awt.EventQueue.access$000(EventQueue.java:85)
	at java.awt.EventQueue$1.run(EventQueue.java:603)
	at java.awt.EventQueue$1.run(EventQueue.java:601)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
	at java.awt.EventQueue$2.run(EventQueue.java:617)
	at java.awt.EventQueue$2.run(EventQueue.java:615)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:614)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

Information about your version of Java:

  os.arch => amd64
  os.name => Linux
  os.version => 3.2.0-38-generic
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.X11GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => gnome
  file.separator => /

The up-to-date check says: CHECK_TURNED_OFF

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: /Users/iarganda/workspace/fiji/java/linux-amd64/jdk1.6.0_24//jre
  ij.dir => /Users/iarganda/workspace/fiji

Information about the version of each plugin:

  03f25b21:c16dd595:c16dd595 20130304194535 :00ea500
  dd571089:72192c93:72192c93 20130304194409 :02bc87c
  ec8c284f:6ee6ad0c:68f9f317 20130304195428 :0433ba9
  6738a701:eadd851b:eadd851b 20130304194546 :04a4a5c
  1ae71bdd:6d11d34c:6d11d34c 20130304194545 :04b914d
  30420365:4aa95d57:4aa95d57 20130304194621 :069ebf3
  f4c9ca4f:1fe53fd4:2f222807 20130304194428 :07d52a1
  2ecf08f9:e2040f25:fb2067da 20130304194251 :0844563
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  283a7027:a27962e6:a27962e6 20130304194251 :0c2a5e1
  6478da40:1d98f525:1d98f525 20130304201801 :0dccf16
  58e12d38:0756c7da:0756c7da 20130304194645 :0e15c07
  aea09ff6:1256f67c:7efc7e20 20130304194603 :0ed5f9b
  ef0b8bfa:39a7762a:2380a890 20130304194218 :1237531
  d9ac55a6:0eaebea8:cc369caf 20130304195418 :1553a4d
  83031c0a:1cc761d8:1cc761d8 20130304194315 :1577fc3
  975368e0:531c0025:531c0025 20130304194706 :16012d5
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  97d046c8:40bd82de:40bd82de 20130304194619 :186e052
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  5a40b171:9017d436:63e90571 20130304194522 :1ad3be0
  e094b1c1:44ab48c3:5633cb6f 20130304194353 :1b71cda
  981f35fd:f48d5b7d:a7d5f82c 20130304195403 :1dedefe
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  cf53c300:25331672:25331672 20130304201805 :8c636e5
  411f9395:a8c8209f:a8c8209f 20130304195240 :8dd17a3
  443586eb:a88b9304:0378e76d 20130304195428 :8dee1e1
  4064f82d:68a9e41d:68a9e41d 20130304202236 :8e16095
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  1785bbbf 20130304184729 macros/toolsets/Clear Custom Tools.txt
  54200f47 20130304184729 macros/toolsets/Drawing Tools.txt
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Comment 1 Ignacio Arganda 2013-03-05 18:32:43 CST 
I am using a clean version of the master branch.
Comment 2 Johannes Schindelin 2013-03-05 19:13:42 CST 
Well, the problem is that your ij-updater-ssh is not really up-to-date. The dependency ij-core of the updater just went through a couple of changes, most notably a refactoring of the plugin framework into scijava-common.

Now, since I made Bug_Submitter depend on ij-updater-core directly (rather than going through Fiji_Updater.jar), ij-updater-core is actually newer than what is on the update site. But ij-updater-ssh is not, since it is installed by the updater itself, from the update site.

As a work-around, I just added this call to Build.sh:

    ./modules/scijava-common/bin/maven-helper.sh \
        net.imagej:ij-updater-ssh:2.0.0-SNAPSHOT

Please pull; After that, uploading should work flawlessly again.