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Bug 596 - Nikon ND2
Nikon ND2
Status: RESOLVED WORKSFORME
Product: Fiji
Classification: Unclassified
Component: Bio-Formats
unspecified
PC Windows
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2013-04-29 00:27 CDT by Stephe Cody
Modified: 2013-07-08 09:57 CDT
2 users (show)

See Also:

Attachments
error message (1.22 KB, text/plain)
2013-04-29 00:34 CDT, Stephe Cody
Sample ND2 image (69 bytes, text/plain)
2013-04-29 00:40 CDT, Stephe Cody
The real ND2 file (not a link to dropbox) (2.19 MB, application/octet-stream)
2013-07-08 09:34 CDT, Johannes Schindelin

Description Stephe Cody 2013-04-29 00:27:36 CDT 
Hi,

I don't seem to be able to open Nikon ND2 files anymore using LOCI.

Version Version 1.47o

Thanks

Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: C:\Fiji\FIJI-W~1\Fiji.app/java/win64/jdk1.6.0_24/jre/
  ij.dir => C:\Fiji\FIJI-W~1\Fiji.app

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Comment 1 Stephe Cody 2013-04-29 00:34:18 CDT 
Created attachment 100
error message
Comment 2 Stephe Cody 2013-04-29 00:40:15 CDT 
Created attachment 101
Sample ND2 image
Comment 3 Stephe Cody 2013-04-29 00:41:44 CDT 
Sample Image:
https://www.dropbox.com/s/pqk7wfni85dx19l/SVG-CD81%2015min%20CD81.nd2
Comment 4 Johannes Schindelin 2013-07-08 09:34:24 CDT 
Created attachment 106
The real ND2 file (not a link to dropbox)
Comment 5 Johannes Schindelin 2013-07-08 09:35:18 CDT 
Sorry, Stephe, I did not know that you were prevented from uploading the file due to a small maximal attachment size. I bumped it to 5MB.
Comment 6 Johannes Schindelin 2013-07-08 09:57:47 CDT 
With a fully up-to-date Fiji, I was able to open that ND2 file... What "fixed" it is most likely the downgrade of Bio-Formats to the stable version 4.4.9.