Bug 644 – Flatten function includes stack position specific overlay in all slices

Bug 644 - Flatten function includes stack position specific overlay in all slices


Summary:	Flatten function includes stack position specific overlay in all slices

Status:	RESOLVED FIXED

Product:	Fiji
Classification:	Unclassified
Component:	Plugins
Version:	unspecified
Hardware:	PC Windows

Importance:	P2 normal
Assigned To:	ImageJ Bugs Mailing List

URL:

Depends on:
Blocks:

Reported:	2013-07-30 12:35 CDT by Jan Brocher
Modified:	2014-08-25 14:54 CDT
CC List:	3 users (show)

See Also:

Description Jan Brocher 2013-07-30 12:35:20 CDT

When adding overlays at different slice positions in a stack (by previously checking the "set stack position" tick in the overlay options) everything works well as long as they are still overlays. By using the "Flatten [F]" command the stack position is overwritten and the former overlays are destructively integrated into all stack slices.

Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: CHECK_TURNED_OFF

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: D:\Fiji\Fiji.app/java/win64/jdk1.6.0_24//jre
  ij.dir => D:\Fiji\Fiji.app

Information about the version of each plugin:

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Comment 1 Wayne Rasband 2013-07-31 11:17:26 CDT

This bug is fixed in the ImageJ 1.48b daily build.

-wayne