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Bug 649 - Importing a CZI file with ROIs - Coordinates for Rectangles are wrong
Importing a CZI file with ROIs - Coordinates for Rectangles are wrong
Status: RESOLVED MOVED
Product: Fiji
Classification: Unclassified
Component: Bio-Formats
unspecified
PC Windows
: P3 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2013-08-09 02:00 CDT by Sebastian Rhode
Modified: 2013-08-12 12:47 CDT
2 users (show)

See Also:

Attachments
ZIP File containing the data and a screnshot. (998.24 KB, application/zip)
2013-08-09 02:00 CDT, Sebastian Rhode

Description Sebastian Rhode 2013-08-09 02:00:10 CDT 
Created attachment 115
ZIP File containing the data and a screnshot.

LOCI Version: 4.4.9-DEV

When I use BioFormats to import a CZI file containing  ROIs (1 rectangle & 1 circle, see Screenshot), the y-coordinates of the rectangle seen to be mirrored. The circle looks OK to me.

I attached also the original CZI file, the resulting TIFF after the import and the XML containing the ROIs definition from the ZEN software.
Comment 1 Melissa Linkert 2013-08-12 12:47:14 CDT 
Moving to a ticket on the OME issue tracking system (http://trac.openmicroscopy.org.uk/ome/ticket/11367), as this is not a Fiji problem.