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Bug 665 - non-correct name of math function
non-correct name of math function
Status: RESOLVED WONTFIX
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Windows
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2013-09-24 12:14 CDT by V
Modified: 2014-06-16 15:00 CDT
4 users (show)

See Also:
Description V 2013-09-24 12:14:07 CDT 
Menu "Process"->"Math": according http://physics.nist.gov/Pubs/SP811/sec10.html#10.1.2 short name of natural logarithm is "ln".

Information about your version of Java:

  os.arch => x86
  os.name => Windows XP
  os.version => 5.1
  java.version => 1.7.0_40
  java.vendor => Oracle Corporation
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.7.0_40-b43
  java.vm.name => Java HotSpot(TM) Client VM
  java.vm.version => 24.0-b56
  java.vm.vendor => Oracle Corporation
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.7
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: CHECK_TURNED_OFF

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
  ij.dir => d:\fiji

Information about the version of each plugin:

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  34b7341d 20130613105738 retro/backport-util-concurrent-3.1.jar
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  a6d5a3b2 20130613105738 retro/retrotranslator-transformer-1.2.9.jar
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  4bb342fa 20130613105738 scripts/Miji.m
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Comment 1 G. Landini 2013-09-24 12:47:26 CDT 
This is an ImageJ issue. If "Log" is changed to "ln" which is the correct name, this will brake all macros, scripts and plugins that call the run("Log"); function.

I would suggest being careful and think whether it is worth fixing it or leaving as is. Sure I can search and replace in all my files, but then everybody will have to do this too.
Comment 2 Johannes Schindelin 2013-09-24 13:01:30 CDT 
There are ways around this: https://github.com/fiji/imagej1/blob/master/ij/IJ.java#L273

However, in the case of "Log" and the _engineering_ convention to write "ln" when referring to the logarithm with natural base, I would argue that we simply imitate the well-established Java API: http://docs.oracle.com/javase/6/docs/api/java/lang/Math.html#log%28double%29 (note in particular the complete and utter absence of an ln() method).

So in the favor of pragmatism, I would not change a thing in ImageJ 1.x. But of course, it is the decision of ImageJ 1.x' BDFL, Wayne.
Comment 3 V 2013-09-24 13:56:21 CDT 
2 G. Landini:
Yes, you're right. Ok, Q closed. Thank you.

2 Johannes Schindelin:
This is not _engineering_ convention, this is scientific convention
and ImageJ is scientific soft, not part of Java. I understand that you want to minimize development time, but according my experience scientific soft usually have most confusing GUIs and user manuals.
Comment 4 Johannes Schindelin 2013-09-24 14:18:27 CDT 
> This is not _engineering_ convention, this is scientific convention

No, it is an engineering convention. I am a mathematician and only in applied mathematics (i.e. engineering) did I encounter the abbreviation "ln" for "log_e".

> and ImageJ is scientific soft

Well, since you are so nit-picky already, why not call it a soft*ware*? Because a "soft" is not what you think it is: http://en.wiktionary.org/wiki/soft#Noun

> not part of Java.

But of course it is written in Java, and as such, quite a few concepts of Java permeate through to ImageJ. Quite a few terms are used ("frame", "array", "slice") in a distinctly non-scientific sense but a rather Java-centric one.

> I understand that you want to minimize development time, but according my
> experience scientific soft usually have most confusing GUIs and user manuals.

Could we just agree to stop the nit-picking already? Otherwise I'd need to say quite a couple of things about this sentence...
Comment 5 Curtis Rueden 2014-06-16 15:00:00 CDT 
OK, so, all bickering aside ;-), we agree not to change the name to "ln"? There are many more pressing matters, and this issue does not stop anyone from computing what they need to compute to get their science done.