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Bug 684 - TrackEM2
TrackEM2
Status: RESOLVED FIXED
Product: Fiji
Classification: Unclassified
Component: TrakEM2
unspecified
PC Windows
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2013-12-11 07:13 CST by german
Modified: 2013-12-13 10:29 CST
3 users (show)

See Also:
Description german 2013-12-11 07:13:32 CST 
The 'Select and Transform' Tool (black Arrow) doesn't work anymore in TrackEM2. With this tool it is not possible anymore to select a single image in the canvas. 

As a workaround we select the image on the 'Patches' panel on the left side of the canvas > rightclick > transform > transform(affine). After this, images are selectable, as long as the  'Select and Transform' Tool is not active.

It happens on both, linux and win7 workstations since we did fiji-update several weeks ago.

Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: D:\FIJI-W~1\Fiji.app/java/win64/jdk1.6.0_24//jre
  ij.dir => D:\FIJI-W~1\Fiji.app

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Comment 1 Wayne Rasband 2013-12-11 09:30:42 CST 
This problem is probably related to changes I made to the ImageJ toolbar in v1.48h that made it expandable. I can try to fix or work around the problem but I need to know the exact steps needed to reproduce it. I can start TrackEM2 using the File>New>TrakEM2 (blank) command, and I see a custom tool that looks like an arrow, but I do not know how to use it.
Comment 2 Albert Cardona 2013-12-11 09:35:47 CST 
Dear Wayne,
thanks for looking into the issue. To test:

1) drag and drop an e.g. single-slice image onto the TrakEM2 canvas.
2) right-click on it and choose "Display - Resize canvas/LayerSet..." and input width and height to e.g. 10 times that of the image. (You could avoid this step by using a very small image).
3) zoom out by pushing the '-' key or control key + mouse wheel.
4) with the black arrow "Select" tool, you should be able to click on the image to select it. A white frame will line the image. Clicking on the black background canvas will deselect it.

Albert
Comment 3 Wayne Rasband 2013-12-11 11:46:26 CST 
Thanks Albert. I was able to work around this problem in the ImageJ 1.48j14 daily build. You can upgrade by using the Help>Update ImageJ command and selecting "daily build" from the drop down menu.
Comment 4 Albert Cardona 2013-12-13 10:29:48 CST 
Wayne Rasband has addressed the issue with an update to ImageJ. Please update ImageJ to the daily build, 1.48k1, via the menu "Help - Update ImageJ...".

Thanks so much Wayne.

Albert