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Bug 696 - Method dependent outlines from binary images
Method dependent outlines from binary images
Status: RESOLVED WONTFIX
Product: Fiji
Classification: Unclassified
Component: Plugins
unspecified
PC Windows
: P4 normal
Assigned To: ImageJ Bugs Mailing List
Depends on:
Blocks:
 
Reported: 2014-01-24 05:48 CST by Jan Brocher
Modified: 2014-01-24 12:15 CST
3 users (show)

See Also:
Description Jan Brocher 2014-01-24 05:48:28 CST 
Creating an outline of particles from a binary image using either the >Process >Binary >Outline or the Outline / Bare Outline show option from the "Analyze Particle" method produces different results. 
The result is not simply shifted.
The outlines follow a different path (might point out differences in the outline determination (chain code?))

Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: CHECK_TURNED_OFF

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: D:\Fiji\Fiji.app/java/win64/jdk1.6.0_24//jre
  ij.dir => D:\Fiji\Fiji.app

Information about the version of each plugin:

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Comment 1 G. Landini 2014-01-24 06:13:14 CST 
One is a binary operation that generates and edge surrounding the binary region. This is a type of morphological edge called External Gradient with a square kernel of radius 1.

The other is a polygon encoding of the binary region (one the region itself). Different things, not a bug.
Suggest to leave "as is".
Comment 2 G. Landini 2014-01-24 08:10:24 CST 
Correction: actually Process>Binary>Outlines is not strictly the same as the "morphological external gradient" if you invert the image because if finds  gradients at the image boundary... but it is indeed a different procedure than the boundary encoding in the particle analyzer, so I would not expect them to return the same result.
Comment 3 Johannes Schindelin 2014-01-24 12:15:58 CST 
On Fri, 24 Jan 2014, BioVoxxel wrote:

> Hi Gabriel,
> 
> Thanks for the comments and the explanations. If this difference exists "on
> purpose" everything is fine.
> I was originally only surprised why this occurred.
> 
> Thanks again, cheers,
> Jan